KEGG   Citrus sinensis (Valencia orange): 102609367
Entry
102609367         CDS       T02983                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38 isoform X2
  KO
K18655  ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03013  Nucleocytoplasmic transport
cit03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102609367
   03015 mRNA surveillance pathway
    102609367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102609367
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102609367
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     102609367
SSDB
Motif
Pfam: DEAD Helicase_C SIP
Other DBs
NCBI-GeneID: 102609367
NCBI-ProteinID: XP_006492655
Position
2:complement(join(1363903..1363959,1364139..1364224,1364650..1364761,1364859..1365260,1365702..1365767,1366171..1366398,1366554..1366847,1367414..1367677))
AA seq 502 aa
MADATENPAAPATLEPLPSTEPKRSWGDVAEEEEEKEKEERKQQQQQQTANTSEDKSTAE
LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK
FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT
RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA
KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV
TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTK
NSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN
LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI
KVTEVRNSDEDFKAALKAAGLL
NT seq 1509 nt   +upstreamnt  +downstreamnt
atggccgacgcaaccgaaaacccagcagctcctgccacgttagagccgttgccatcaacg
gagccgaagcgatcgtggggcgacgtagcggaggaggaggaggagaaggagaaagaggag
cggaagcagcagcagcagcagcaaaccgctaacacatctgaggataaatcaacggcggaa
ctggacgtcgagggtttgactattgatgagagcaagaaagtcaacaagttccttgacgaa
gctgaagactctagcatcaaaaccgttacgactggtgatacaccttatacctccgcaact
acatttgaagatttgaatctctcaccagagctcctaaagggattatacgtggaaatgaaa
ttccagaagcctagcaagattcaagccatcagtttgcctatgatcttgactcctccctac
agaaatttgattgctcaggcacgtaatggttctggcaagacgacttgttttgtgcttggg
atgttgagccgtgttgatccaaacctcaaggctccacaagcactttgcatttgtcctacc
agagaattggcaattcagaatttggaggttcttcgtaagatggggaagcacacagggata
acttcagaatgtgctgtgccaacagacagcaccaattatgtgccaatatcaaaaaggcca
ccagttacagcacaagtagtgattggcactcctggtaccattaagaaatggatgtcagca
aagaaattgggtttcagtcgtttgaaaattcttgtgtatgatgaggccgatcacatgctt
gatgaggctggctttagagatgattctttgaggattatgaaggacattgaaagaagcagt
ggtcattgccaggttcttctattttcagccacattcaacgaaactgtcaagaattttgta
acaaggattgttaaagattataatcaactttttgtcaagaaagaagagttgtcattagaa
tcagtaaagcagtataaagtttactgtcctgacgaacttgccaaggttatggtaatcagg
gatagaatttttgaactgggagaaaaaatggggcagacaattatatttgtccgcacaaag
aatagtgcaagcgcgttgcataaagcacttaaagattttggttatgaagtcactacaatt
atgggtgctacaatccaggaagaacgagacaaaattgttaaagagtttaaagatggatta
acacaagttcttatatcaactgacgttcttgcccgaggttttgatcagcagcaggttaat
cttattgtaaattatgatcctccggtgaaacatggaaaacatttagagcctgattgtgaa
gtatacctgcatagaattggccgggcaggacgctttggccgcaaaggagttgtgtttaat
ttgttgatggatggtgatgatatgattatcatggaaaaaattgaacggtactttgacatc
aaagtaactgaggtccggaacagcgacgaggacttcaaggcagcacttaaggcagccggt
ttgctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

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