KEGG   Citrus sinensis (Valencia orange): 102618370
Entry
102618370         CDS       T02983                                 
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
  KO
K12897  transformer-2 protein
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102618370
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cit01009]
    102618370
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cit03041]
    102618370
Protein phosphatases and associated proteins [BR:cit01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102618370
Spliceosome [BR:cit03041]
 Common components
  Common spliceosomal components
   SR proteins
    102618370
SSDB
Motif
Pfam: RRM_1 RRM_5
Other DBs
NCBI-GeneID: 102618370
NCBI-ProteinID: XP_024957182
Position
7:complement(join(657380..657588,657704..657773,658365..658514,658633..658732,658860..658883,658990..659130,660064..660083,660185..660187))
AA seq 238 aa
MADSPRKKDLRSPSPVRELSRSRSRSRSFSRSRSRSRSGSWSRPRQRSRSQSRGRSRSRS
RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD
SVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDIGRGDRGRYRSG
RDDYGYRRSPRRSPYRGGRDYSPRHSPPYGGRSRRERSRSVPRSPYGSPERKYARGSR
NT seq 717 nt   +upstreamnt  +downstreamnt
atggctgattctcctcgcaaaaaggatttgcggtccccttcccctgtgagggaactttca
aggtctagatctagatctaggtctttctctaggtcgaggtctcgatcaagatcaggatct
tggtctaggccaaggcagagatcccgttcccaaagtcgcggcagatcaaggtccagaagt
cgtggaaggaccgagactggaaatcctggaaataccctttatgtaactggcctatctaca
agagtcacagaaagggaccttgaaaaacatttctccaaggaggggaaggttgcttcatgt
tttcttgttgtggagccccgtacacgcatctctcgaggttttgcttttgttactatggat
agtgttgaggatgctgaacgctgcatcaagtatctcaaccagtcagttctggagggccga
tatattactgtggagaggtcacggaggaaacgaccaagaacccctactcctggacactat
cttgggctgaaaagttcaagagacattggccgtggtgatcgcggaaggtatcgttccggc
cgtgatgattatggttatcgtagatctccaagacgctctccataccgaggaggtcgtgat
tattctcctaggcattctcctccttatggtggaagatcaaggagggagcggtccaggtca
gttccccgctcaccttatggtagcccagaaaggaagtatgctcgtggttctagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (51)   

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