KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100408376
Entry
100408376         CDS       T03264                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151  PI3K-Akt signaling pathway
cjc04510  Focal adhesion
cjc04512  ECM-receptor interaction
cjc04820  Cytoskeleton in muscle cells
cjc04974  Protein digestion and absorption
cjc05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100408376 (COL6A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100408376 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100408376 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100408376 (COL6A1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100408376 (COL6A1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100408376 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cjc04147]
    100408376 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:cjc00536]
    100408376 (COL6A1)
Exosome [BR:cjc04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   100408376 (COL6A1)
Glycosaminoglycan binding proteins [BR:cjc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100408376 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   100408376 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 100408376
NCBI-ProteinID: XP_035138765
Ensembl: ENSCJAG00000001877
Position
21:49783180..49806886
AA seq 1028 aa
MRAARTLLPLLLQACWVAAQDEPESPKAVAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIQGLTRMPGGRDSLKSSVDAV
KYFGKGTYTDCAIKKGLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEAISQTIDTIVDMIK
NNVEQVCCSFECQPARGPPGPRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGETGYPGLPGCKGSPGFDGIQGPPGP
KGDPGAFGLKGEKGEPGANGEAGRPGSSGPPGDLGEPGEPGPPGEKGEAGDEGNPGPDGA
PGERGGPGERGPRGTPGTRGPRGDAGEAGPQGDQGREGPTGIPGDPGEAGPIGPKGYRGD
EGPPGSEGARGAPGPAGAPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGINGTK
GYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGPPGHPGPPGPDECEILDII
MKMCSCCECKCGPIDLLFVLDSSESIGLQNFEIAKDFVVKVIDRLSRDELVKFEPGQSSA
GVVQYSHSQMQEHVSLRSPGIRNMQELKEAIKSLQWMAGGTFTGEALQYTRDQLLPPSPH
SRIALVITDGRSDTQRDTTPLNVLCGPGIQVVSVGIKDVFDFVPGSDQLNVISCQGLAPS
QGRPGISLVKENYAELLEDAFLKNVTAQICIDKKCPDYTCPITFSSPADITILLDGSASV
GSHNFDTTKHFAKRLAERFLEAGRTDPDHNVRVAVVQYSGTGQQRPERASLQFLQNYTAL
ASSIDAMDFFNDATDVNDALAYVTRFYREASSGTAKKRLLLFSDGNSQGATPAAIEKAVQ
EAQQAGVEIFVVVVGSQVNEPHIRVLVSGKTAEYNVAYGERHLFRVPNYQALLRGVFHQT
VSRKVALG
NT seq 3087 nt   +upstreamnt  +downstreamnt
atgagggcagcccgcactctgctgcccctgctgctgcaggcctgctgggtggccgcacag
gacgagcccgagtccccaaaagcagtcgccttccaggactgccccgtggacctgttcttt
gtgctggacacgtctgagagcgtggccctgaggctgaagccctacggggccctggtggac
aaggtcaagtccttcaccaagcgcttcatcgacaacctgagggacaggtactaccgctgt
gaccggaacctggtgtggaacgcgggcgcgctgcactacagcgacgaggtggagatcatc
cagggcctcacgcgcatgcccggcggccgcgactccctcaagagcagtgtggacgccgtc
aagtacttcgggaagggcacctacaccgactgcgccatcaagaaggggctggagcagctc
ctcgtggggggctcccacctgaaggagaacaagtacctgattgtggtgaccgacgggcac
ccactggagggctacaaggaaccatgcggggggctggaggatgctgtgaatgaggccaag
cacctgggcatcaaagtgttctcggtggccatcactcccgaccacctggagccgcgcctc
agcatcatcgccacggaccacacgtaccggcgaaacttcacagcggctgactggggccag
agccgtgatgcagaggaggccattagccagaccatcgacaccatcgtggacatgatcaaa
aataatgtggagcaagtgtgttgctccttcgagtgccagcctgcaagaggacctccgggg
ccccggggtgaccccggcttcgagggagaacgaggcaagccagggctcccaggagagaag
ggagaagctggagatcctggaagacccggagacctcggacctgttggataccaggggatg
aagggagaaaaagggagccgcggggagaagggctccaggggaccaaagggctacaaggga
gagaagggcaagcgtggcatcgacggggtggatggcgtgaagggggagacggggtaccca
ggcctgccaggctgcaagggctcgcccgggtttgacggcattcaaggaccccccggcccc
aagggagaccccggtgcctttgggctgaaaggagaaaagggcgagcctggagccaacggg
gaggcagggagacctgggagctcagggccacctggagacctgggtgagccaggagagcct
ggtcccccaggagagaaaggagaggcgggcgacgaggggaacccaggacctgacggtgcc
cccggggagcggggcggccctggagagagaggaccacgggggaccccaggcacgcgggga
ccaagaggagacgctggggaagctggcccgcaaggcgaccagggacgagaagggcccact
ggcatccccggagacccgggtgaggccggccccatcggacctaaaggctaccgaggagat
gagggccccccagggtccgagggcgccagaggagctccaggacctgctggggcccctgga
gaccccgggctgatgggcgagaggggtgaagatggcccccctggaaatggcacggagggc
ttccccggcttccccggctatccgggcaacaggggtcctcctgggataaacggcacgaaa
ggctacccaggcctcaagggggatgagggggaagccggggaccctggagatgataacaat
gacattgcaccccgaggagtcaaaggtgcgaaggggtaccgtggccccgagggcccccag
gggcccccaggacatccaggaccacctgggccagatgaatgcgagattttggacatcatc
atgaaaatgtgctcttgctgtgaatgcaagtgcggccccatcgacctcctcttcgtgctg
gacagttcagagagcatcggcctgcagaacttcgagatcgccaaggacttcgtggtcaag
gtcattgacaggctgagccgggacgagctggtcaagttcgagccagggcagtcgtccgcg
ggtgtggtgcagtacagccacagccagatgcaggagcacgtgagcctgcgcagccctggc
atccggaacatgcaggaactcaaggaagccatcaagagcctgcagtggatggcaggtggc
accttcacgggagaggcgctgcagtacacacgggaccagctgctgccacccagtcctcac
agccgcattgccctggtcatcaccgacgggcgctctgacacccagagggacaccacgcca
ctcaatgtgctctgcggccctggcatccaggtggtctccgtgggcatcaaggatgtgttt
gacttcgtcccgggctccgaccagctcaacgtcatttcctgccaaggcctggcaccctcc
cagggccggccaggcatctcactggtgaaggagaactacgcagagctgctggaggatgcc
ttcctgaagaatgtcacggcccagatctgcatagacaagaagtgtccagattatacctgt
cctatcacattctcctccccggctgacatcaccatcctgctggacggctcggccagcgtg
ggcagccacaactttgacaccaccaagcacttcgccaagcggctggccgaacgcttcctc
gaggcgggcaggacggacccggaccacaacgtgcgggtggcagtggtgcagtacagcggc
acgggccagcagcggccggagcgggcgtcactgcagttcctgcagaactacacggccctg
gccagcagcatcgacgccatggacttcttcaacgatgccaccgacgtcaacgacgccctg
gcctacgtgacccgcttctaccgcgaggcttcatctggcactgccaagaagaggctgctg
ctcttctcagacggcaattcgcagggcgccacgcctgcagccatcgagaaggcagtgcag
gaggcccagcaggcaggcgtggagatcttcgtggtggttgtgggcagccaggtgaacgag
ccccacatccgcgtcctggtcagcggcaagacggccgagtacaacgtagcctacggcgag
cgccacctgttccgggtccccaactaccaggccctgctccgtggcgtcttccaccagacg
gtctccaggaaggtggcgctgggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (45)   

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