KEGG   Coturnix japonica (Japanese quail): 107320526
Entry
107320526         CDS       T04297                                 
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X3
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107320526 (PARN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjo03019]
    107320526 (PARN)
Enzymes [BR:cjo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     107320526 (PARN)
Messenger RNA biogenesis [BR:cjo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107320526 (PARN)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H NCBP3 RRM_1
Other DBs
NCBI-GeneID: 107320526
NCBI-ProteinID: XP_015731936
UniProt: A0A8C2TR28
Position
14:complement(829751..864086)
AA seq 635 aa
MEVIRSNFKDNLSKVYEAVEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQKKF
IDKIVKQIDEFLKNEDKESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERYII
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLQGPDLQPKRDNVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRAKRKCTEDSWKEMERKRLK
TQGAPYITQSQYYCVNSFTGTSIMGKRSMSPIQEETGSDSLEEEEVPENQTNSCAESPPD
VKKKVKRLKKIKREEVSAGSLTSNSTEIFEVPETW
NT seq 1908 nt   +upstreamnt  +downstreamnt
atggaggtgatcaggagcaattttaaggataacctgagcaaagtgtacgaagctgtcgag
gaagcggacttcctggccattgacggggagttctcagggatcagcgacgggccttctgtt
agtgcattaaccaatggctttgacacaccagaagaacggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgaccacacagaa
gagaagtatattatgaaatcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagcatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccatacttaaatcaggaagaggaaaga
caactaagggaacagtatgatgaaaagcgttctcaggccaatggtgcaggatctctctcc
tatatttctcctaatgccacaaaatgtcctgttgcgattcctgaagatcagaaaaaattc
attgataaaatagtgaaacaaatagatgaatttttaaagaatgaagacaaggaaagtctg
gaactggagccatgtacagggtttcagaggaaattaatttaccagaccttgagctggaag
tatccaaaaggtatccacgttgaaaccctagagacagataagaaggagagatatattatt
attagtaaggtagatgaagaagaacggaaaagaagagaacaacagaaacaagcaaaggaa
caggaagaactgaatgatgcagtaggattttccagagttgttcatgctattgcaaattct
ggcaaacttgttattgggcacaatatgcttctagatgttatgcatactatacaccagttc
tattgtcctctacctgatgacctaagtgaattcaaagaagtgacgtcatgtgtgtttccc
cggctattggatactaaactgatggcaagtacacaaccttttaaggacatcattaataat
acgtcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaagggtttccaagttacgacacggcttctgaacaacttcatgaagcgggt
tatgatgcttacattactggactgtgcttcatctccatggctaactatctaggttcgttt
cttagtcctccaaaaaatcacgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctgaatttgcaaggacctgacttg
cagccaaaacgagataatgttcttcatgtcacttttcccaaagagtggaagactagtgac
ctttaccagctttttagtgcctttggtaacattcaggtttcatggattgatgatacatca
gcctttgtatcgttgagccagccagaacaagtacaaatagctgtaaacaccagcagatac
gctgaaagttacaggatccagacatacgcagaatatgttgagaaaaaacatgaagaaaag
cgagcaaagagaaaatgtacggaagatagttggaaggagatggagagaaaacggttgaaa
actcaaggtgcaccgtacattacccagagtcaatactattgtgttaacagttttacaggt
accagtataatgggaaagagaagtatgagtcctattcaggaagaaactggttctgacagt
ttggaagaagaagaggttccagaaaatcagacaaactcctgtgcggagtctcctccagat
gttaagaagaaagtcaaaaggttaaaaaaaatcaagagagaagaagtttcagcaggaagc
ctcacaagtaattccactgaaatttttgaagtccctgaaacatggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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