KEGG   Coturnix japonica (Japanese quail): 107323875
Entry
107323875         CDS       T04297                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03082  ATP-dependent chromatin remodeling
cjo03083  Polycomb repressive complex
cjo04110  Cell cycle
cjo04330  Notch signaling pathway
cjo04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107323875 (HDAC1)
   03083 Polycomb repressive complex
    107323875 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    107323875 (HDAC1)
   04350 TGF-beta signaling pathway
    107323875 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    107323875 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cjo03036]
    107323875 (HDAC1)
Enzymes [BR:cjo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107323875 (HDAC1)
Chromosome and associated proteins [BR:cjo03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107323875 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     107323875 (HDAC1)
    BRAF-HDAC complex
     107323875 (HDAC1)
    REST complex
     107323875 (HDAC1)
    SHIP complex
     107323875 (HDAC1)
    MiDAC complex
     107323875 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107323875 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107323875 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    107323875 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107323875
NCBI-ProteinID: XP_015738807
Position
23:complement(4503100..4510913)
AA seq 485 aa
MWLYLKQFVFFPAVTKSFLFPGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYR
PHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAG
GSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDI
DIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDE
SYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPM
LMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNT
NEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRIS
CDEEFSDSEDEGEGGRKNVANFKKAKRVKTEEEKEEEEKKDEKEEEKAKEEKAEPKGVKE
EAKST
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgtggttgtatttgaagcagttcgtgtttttccctgctgtaacaaaatcctttctgttc
ccaggtgatgttggaaactattattatggccagggacaccccatgaagccccacaggatc
cggatgacccacaacctactgctgaactacggcctttacaggaagatggagatatatcgc
cctcacaaggcgaacgcggaggagatgaccaagtaccacagtgatgactacatcaaattc
ctgagatccatccgcccagacaacatgtctgagtacagcaagcagatgcaaagatttaac
gtcggggaggactgtcctgtgttcgatgggctgtttgagttctgtcagctctctgctgga
ggctcagttgccagcgctgtgaagctgaacaagcaacagacagatattgctgtgaattgg
gcaggaggccttcaccacgctaagaagtcagaggcttctggcttctgttatgtcaacgat
attgtcctggctatcctggagctcttaaagtatcaccagagggtcctgtacattgacatt
gatattcaccacggagatggtgtggaggaagccttctataccacagaccgtgtgatgact
gtgtccttccataagtatggagagtacttcccaggaacaggggacctgcgggacattggt
gcaggcaaaggcaagtactacgctgtcaactatcccctccgggatgggattgatgatgag
tcctatgaggcaatattcaagccggtgatatctaaagtgatggagacattccagcctagt
gcagttgtcctgcagtgcgggtcggattcactgtctggggacaggctgggttgttttaat
ctgaccatcaaaggtcatgccaagtgtgtggagtttgtcaaaagttttaatttgcctatg
ctgatgctgggaggaggtggctacacaatccgcaacgtggccagatgctggacctatgag
actgctgtggctttggacactgagatcccaaatgaactcccatataatgactattttgag
tactttggaccagactttaagctgcacatcagtccctcaaacatgactaaccaaaatacc
aacgagtaccttgagaagatcaagcagcgtctctttgagaatctgcgcatgctgcctcat
gcccctggtgtccagatgcagccaattcctgaggatgctgttcaggaagacagtggagat
gaagaggaagaagatcctgagaagcgcatttcaatccgcaattctgataagagaatatcc
tgtgatgaagaattctctgactccgaagatgaaggggaaggagggcgcaaaaacgttgcc
aactttaagaaggccaaacgtgtgaaaacagaagaggaaaaggaggaggaggagaagaag
gatgagaaagaagaggaaaaagcaaaagaggagaaagctgaacccaagggggtgaaggaa
gaggcaaaatccacctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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