KEGG   Clostridium kluyveri DSM 555: CKL_1368
Entry
CKL_1368          CDS       T00564                                 
Name
(GenBank) Hypothetical protein
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
ckl  Clostridium kluyveri DSM 555
Pathway
ckl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ckl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CKL_1368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ckl03400]
    CKL_1368
Enzymes [BR:ckl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CKL_1368
DNA repair and recombination proteins [BR:ckl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CKL_1368
SSDB
Motif
Pfam: PriA_3primeBD DEAD PriA_C ResIII Helicase_C PriA_CRR AAA_30 T2SSE AAA_19 AAA_11 PIF1 Flavi_DEAD SLFN-g3_helicase ADDB_N PhoH nSTAND3 AAA_23 AAA_16 AAA_22 Viral_helicase1 zinc-ribbons_6
Other DBs
NCBI-ProteinID: EDK33410
UniProt: A5N7X9
Position
1406371..1408572
AA seq 733 aa
MYIYAGVIVNNNFIKLDKIFTYKVPEKLKNRVEIGFRIKVPFGKGNKKLDGFIVRLYDKE
QEQIEIKEIIDICDDFSLFTKKDLELIENMREKYLCTYLECIKVFIPPGIFKGIKNKKKT
LIFIGRKLEEKFNKEPYKSIYELIKNNNGLYTKNFISKNYNISMSSLNTMIKYGFLLSDE
KIINRYNTVQYENYSRKRLNKEQQNAVDKIINSNKKLFLIHGVTGSGKTEIYMHIVEKAL
KENKESLVLVPEIVLTPQMVERFKGRFGKDISVVHSKLSEGERYDEWVRVKQGKVKVAIG
ARSAIFLPFKNLGFIIIDEEHEGSYKSDSNPKYNVREIGEMKCSQYDCKMILGSATPSVE
TYYRCKRGEIELITIENRVNGIKMPEVEIVDMREELLNNNKSMFSRALYEAICDRLIKKE
QIILFLNRRGYSTFVSCRKCGYVFKCNNCDISFTYHYDKKKLMCHYCGSVTDIPKMCPKC
FSKYVKYFGLGTEKVEQEIKKLFPEANILRMDFDTTRNKNSYENIYNRFKNKQADILIGT
QMVAKGLDFKDVTLVGVIAADVSINLPDFRAAERTYELITQVSGRAGRGEKSGKVIVQTY
NPENYSIRCAASNDYKSFYQEEISIRQNMEYPPFVDLLLINMSSKNENLLIKNIQNVGIF
LKNMWEKNDKITLLGPCPCQISKIKELYRWQIILKGQIRRDDAKNVRKTVYHLLKHVYND
IRVSIDMNPNNML
NT seq 2202 nt   +upstreamnt  +downstreamnt
gtgtatatatatgcaggtgtaattgtaaataacaatttcataaaattagataaaattttt
acctataaagtaccagaaaaattaaaaaacagagtagagataggttttagaataaaggtt
ccttttggtaagggaaataaaaaattggatgggtttatagttagactctatgataaagag
caggaacaaatagagattaaagagattattgatatctgtgatgatttttcacttttcact
aaaaaggatctagaacttatagaaaatatgagggaaaaatatttatgtacgtatcttgag
tgtataaaagtatttataccaccaggaatatttaaaggtataaaaaataagaagaaaact
ttaatttttatagggaggaaactagaagaaaaatttaataaagaaccttataagagtatt
tatgaattaataaagaataataatggtctatatactaaaaattttataagtaaaaattac
aatatatcaatgtcatctctaaatactatgataaaatatggctttcttttatcagatgag
aaaattataaatagatataatacagttcaatatgaaaattattcaaggaaaagactaaat
aaagaacaacaaaatgcagtagataaaataataaattccaataaaaagctatttttaatt
catggagttacaggaagtggcaaaactgaaatttatatgcacatagttgaaaaagctttg
aaagagaataaggaatccttggtattggtgcctgagattgtactcacccctcaaatggtt
gaaagatttaaaggtagattcggaaaagatattagtgtggttcacagcaaactttcagaa
ggtgaaagatatgatgaatgggttagagtaaaacagggaaaggtgaaggttgccataggt
gcaagatctgcaatttttcttccatttaagaatttaggctttataataatagatgaggaa
catgaaggaagttataaatcagacagcaatcccaaatataatgttagagaaataggggaa
atgaagtgcagtcaatatgattgcaaaatgatactaggttcagctacaccttccgtagaa
acttattatagatgtaaaaggggagaaattgaacttataactatagaaaatagagtaaat
ggaataaaaatgcctgaagtggaaattgtggatatgagagaggagcttttaaataataac
aagtccatgtttagcagagctttgtatgaggctatttgtgatagactaataaaaaaggaa
caaataatattatttttaaatagaagaggatattccacctttgtatcctgtagaaaatgt
gggtatgtttttaaatgtaataattgtgatatatcctttacctatcactatgataaaaaa
aagctcatgtgtcactactgtggaagtgtaactgatataccaaagatgtgtcctaaatgt
tttagtaaatatgtaaagtattttgggcttggaacagagaaagtagaacaggaaataaaa
aaattgtttccagaggctaatatacttagaatggattttgataccacaagaaataaaaat
tcttatgagaatatttataacagattcaaaaataaacaagcagatatattaataggtact
caaatggtagccaagggtttggactttaaagatgtgactctcgtaggtgttatagcagca
gatgtgtccattaatctaccagactttagagcagcagaaaggacttatgagcttataact
caagtttcaggaagagctggaagaggagaaaagtcgggaaaagtaattgttcaaacttat
aatcctgaaaattacagtataagatgtgcagctagtaatgattataagagcttttatcag
gaagaaatcagcataaggcaaaatatggaatacccaccctttgtagatttgcttcttata
aatatgagtagtaaaaatgagaatttattaataaaaaatatacaaaatgttggcatattt
ttaaaaaatatgtgggaaaagaatgataaaattacactactaggtccttgtccctgccaa
atatcaaagataaaggaattatacagatggcagataatattaaagggacaaataagaaga
gatgatgcaaaaaatgttagaaaaacagtttatcatttgttgaaacatgtttataatgat
ataagagttagtatagatatgaatccaaataatatgttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (21)   
   Pfam (21)   
All databases (31)   

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