KEGG   Caldicellulosiruptor kronotskyensis: Calkro_1999
Entry
Calkro_1999       CDS       T01357                                 
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ckn  Caldicellulosiruptor kronotskyensis
Pathway
ckn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ckn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Calkro_1999
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ckn03019]
    Calkro_1999
Messenger RNA biogenesis [BR:ckn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Calkro_1999
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: ADQ46843
UniProt: E4SGG8
Position
complement(2178745..2180412)
AA seq 555 aa
MKKKQEHKIRIIPLGGLNEIGKNMTVIEVNDEIVVIDCGLAFPEDEMLGVDLVIPDISYL
LKNKEKVKALILTHGHEDHIGAIPYVLRDLNVPIYGTRLTLGLVEIKLLEFGIDLNTVKL
FTVRAGDVISFNNMRIEFIRTTHSIADSVAVAIHTPLGPIVHTGDFKVDFTPIEGESIDL
IRFAELGKQGVLALLCDSTNAERPGFTLSEKTVGATFDRIFSQAQGRVIVATFSSHIHRV
QQVINSAEKQGRKICVLGRSMVNVVNKALELGYLKMPDGMLIDVDELDNYPLNKIVLITT
GSQGEPMSALSRMASAEHKKVGIIPGDVVIISAAPIPGNEKFVNRVINDLFKQGAQVIYE
DIDDIHVSGHACQEEIKLIHNLTRPKYSIPVHGEFKHLIHHAKLALELGEKNVFVLENGK
VLEITKDGAKVVGMVQAGNILVDGLGVGDVGNVVLRDRRHLAQDGLFIVVLTIDSATRDV
ISGPDIITRGFIYIRESEPLIEEAKRVIKDVLYFCNKNDITEPNAIKVILKDNLRNFLFE
KTRRNPMIIPIITEI
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaagaagaaacaagaacacaaaattagaattatacctcttggtggattaaatgaaatt
ggcaaaaatatgacagtaatagaagtaaatgacgaaatagttgtcattgactgtggtctc
gcattcccagaagatgagatgcttggcgttgatcttgtaatacctgacatatcatatctt
ttaaagaataaagaaaaggtaaaggctttgattttaacacacggtcatgaagaccacatt
ggagcaataccatatgtcctacgcgatttaaacgttccaatatatggtacaagacttact
cttgggcttgttgagataaagcttttagaatttggcattgatttgaacactgttaagttg
tttactgtcagggcaggagatgtaattagctttaacaatatgcgcattgaatttatcagg
acaacacattcgattgctgactctgttgctgttgctatacacacaccgcttggtcctata
gtccatacaggcgatttcaaggtagattttacgcccattgagggtgagtcgattgactta
ataaggtttgcggaacttggcaaacagggagttcttgcacttttgtgcgattcaacaaac
gcagagaggcccggttttacattgtctgaaaagactgttggtgcgacatttgacaggata
ttttcccaagctcagggaagagtaattgttgcaacattttcttcacacattcacagagta
cagcaggtcataaactcagctgaaaagcagggaagaaagatttgcgtcttgggaagaagt
atggtaaatgttgtgaacaaagcacttgaacttggatatctgaagatgccagatggaatg
ctgattgatgttgatgagcttgacaactatcctttgaacaagattgttcttatcaccaca
ggaagtcaaggcgagcctatgtctgcactttcacgaatggcatctgccgagcacaaaaag
gtaggaattattcctggagatgttgttataatctcagcagcgccaattcctggaaatgaa
aagtttgtaaatagagtaataaatgatttgtttaaacagggagcgcaggttatatatgaa
gatattgatgacattcatgtgtcaggtcatgcctgccaggaagagataaagcttatacac
aatcttacaagaccaaaatatagtattcctgtgcatggagaattcaagcatttaattcat
catgcaaagcttgcattagaacttggcgaaaaaaatgtatttgtacttgaaaatgggaaa
gtattggaaataacaaaagatggagcaaaagttgttggaatggtacaagccgggaatatt
ttagttgatggtcttggtgtgggagatgttggaaatgtagttctcagagataggcgtcac
cttgcacaggatgggctttttatcgttgtgctgactattgattcggcaacaagagatgtc
atctcaggtcctgatataatcacaagaggttttatatatattagagaatctgagcccctg
attgaagaggcaaaaagagtaataaaagacgttctttacttttgcaataagaacgatatt
actgagcccaatgcaataaaggtaattttaaaagataatctgagaaatttcttatttgaa
aaaacaagaagaaatccgatgataattccaatcataaccgagatttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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