KEGG   Campylobacter lari RM2100: CLA_0450
Entry
CLA_0450          CDS       T00858                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cla  Campylobacter lari RM2100
Pathway
cla03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CLA_0450 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cla03021]
    CLA_0450 (rpoC)
   03400 DNA repair and recombination proteins [BR:cla03400]
    CLA_0450 (rpoC)
Enzymes [BR:cla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CLA_0450 (rpoC)
Transcription machinery [BR:cla03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CLA_0450 (rpoC)
DNA repair and recombination proteins [BR:cla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CLA_0450 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: ACM63803
UniProt: B9KFG8
Position
421532..426085
AA seq 1517 aa
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTTSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAYYDNENSKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVALLNQLKEDIASTNSEAKKKTIIKRLKVVENFLNS
NLNSNTNIDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIRSVVDGRKITTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDYVYKEGGLEVSASFLDKLKDLGFEYATKAGISISIADIIVPDQKQ
KNIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNILSKDMMELIKKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTVDDCGAHEGVEINEITADGVVIETLEERILGR
VLAENIIDSITNEILFSEGTLIDEEKARVIVESGVKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYEDRQGKTIVANHRNAAILLVEPKIKAPFKGTIHIEHAYEDVVVSVKAKNNEAKFIL
RKYDLAKANELAGVSGNIEGKLYIPYSDGVEVAENESIVEVIKEGWNIPNRIPYASELLV
KDGDPITQDIIAGAKGTLKFYMLKGDGLDRIKNLKKGDVVKEKGVFVVIADENDREAKRH
YIPRESVIEFDDSAFVDNPKAIIAKSSKEDKTIIAEWDAYNNTVIAEVAGTINFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPAILILGEKGKMVRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAATKSKDITGGLPRVSELFEARKPKNTAVIAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSKRIQVRDGEFIHAGEKLTDGVISSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGHTNFIVGDLVSRRKFREENERILKYGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYSEQNIKLKQQN
NT seq 4554 nt   +upstreamnt  +downstreamnt
atgagtaaatttaaacctatcgaaataaaagaagatggtagaccaagagactttgaagct
ttccagctaagacttgcaagtccagaaaaaataaaatcttggtcatatggtgaagtaaaa
aaaccagaaactattaactatagaaccttaaagccagaaagagatggattattttgtgct
aaaatttttggcccagtgagagattatgagtgtctttgtggcaaatacaaaaaaatgcgt
tttaaaggcattaaatgtgaaaagtgtggggttgaagttactacttcaaaagttcgtcgc
tcaagaatggggcatatagagcttgtaactcctgttgctcacatttggtatgtaaattct
ttaccaagtcgtataggaacattacttggtgttaaaatgaaagatttagagcgtgtattg
tattatgaagcatacatagtagaaaatccaggtgatgcatattatgataatgaaaattca
aaaaaagttgaattttgcgatgttttaaatgaagagcaatatttaaatttaatgcaacgc
tatgaaagcagtggatttaaagctagaatgggtggagaagttgttagagatttgctagca
aatttagatcttgttgcattgttaaatcaattaaaagaagatattgcttcaacaaattct
gaagccaagaaaaaaactattattaaacgcttaaaagttgtagaaaatttcttaaatagt
aatttaaatagcaatacaaacattgatgaagttgtgccaaatagacctgaatggatgatg
atcacaaatcttcctgtgttgccacctgatttaagacctttggttgctttagatggtgga
aaatttgctgtttctgatgtgaatgatttatatagaagagttattaatagaaatactcgc
ttaaaaagattaatggagcttgatgcacctgaaattatcattagaaatgaaaaaagaatg
cttcaagaagcagttgatgctttatttgataatggtagaagagcaaatgcagtaaaaggt
gctaataagcgtccattaaaatctttaagtgaaatcatcaaaggaaaacaaggtcgtttc
agacaaaatctacttggtaagagggtggatttttcaggtcgtagcgttatagttgttggg
ccaaaacttagaatggatcaatgtggtttacctaagaaaatggctttagaattatttaaa
ccgcatttattggctaagcttgaagaaaaaggttatgcaacaactgttaaacaagccaaa
aaaatgatcgaaaataaaaccaatgaagtttgggagtgtttagaagaggttgttaaaggt
catcctgtaatgcttaaccgtgcgccaactctccataaactttctatacaagcgtttcac
cctgtgcttgttgaaggtaaagctatacaacttcatccattggtgtgtgcagcatttaat
gccgactttgatggggatcaaatggctgtgcatgtgcctttatcacaagaagcgatagct
gaatgtaaagtattaatgctctcatctatgaatatcttgcttccagcaagtggtcgttct
gtgactgttccttctcaagatatggttttaggaatttattatctatctttagaaaaagat
ggtgctaaaggtgagcataaaatttgtactggaattgaagaggttatgatagctttagaa
gcaaaatctttagatattcatgcaagcattagaagtgtggttgatggaagaaaaatcaca
acaaccgcgggtagattaatcattaagtctatcttacctgattttgttcctgaaaatatg
tggaataaagtcatgaagaaaaaagatatcgctgctttggttgattatgtttataaagaa
ggcggacttgaagtaagtgcgagctttttagataaactaaaagatcttggttttgagtat
gcaacaaaagcaggtatttctatttcaattgctgatattattgtgcctgatcaaaagcaa
aaaaatattgatgaagctaaaaaacaagtaagagaaattcaaaattcatataatctaggt
ttaatcacttcaggcgaaagatataataagattattgatatttggaaaagcactaataat
atcttgtcaaaagatatgatggagttgattaaaaaagataaagaaggatttaactctatt
tatatgatggcagattctggtgctagaggttcagcagcccaaatttcacagcttgctgcg
atgaggggtcttatggctaagcctgatggctcaattattgaaacgcctattatttcaaat
ttccgtgaagggcttaatgtacttgagtatttcatatcaactcatggtgctagaaaaggt
cttgcagatacagcgttaaaaacggcaaatgcaggttatttaacaagaaaacttatcgat
gtggcacaaaatgtaaaagttacagtggatgattgtggtgcacatgagggtgttgaaatt
aatgaaatcacagcagatggtgtcgtaattgaaaccttagaggaaagaattttaggaaga
gtcttagctgaaaatattattgattctattactaatgaaattttattttcagaaggtact
ttgatagatgaagaaaaagctagagtaattgttgaaagtggtgtaaaaagtgtaagtatt
agaactcctattacttgcaaagctaaaaaaggagtttgttctaaatgctatggtattaac
ctaggtgagggcaaattagttaagccaggtgaagctgtaggtattatatctgctcaatca
atcggtgagccaggaactcagcttacactaagaactttccatagtggcggtactgctagt
acagatttgcaagatcgtcaagtagtagcacacaaagaaggttttgtgagattttataat
cttaacacttatgaagatagacaaggtaaaactatcgttgccaatcaccgcaacgctgct
attttacttgttgaaccaaaaatcaaagctccatttaaaggaactatccatattgaacat
gcatatgaagatgtagtggttagcgttaaagcaaaaaacaatgaagctaaatttatatta
agaaaatatgacttagcaaaagctaatgagcttgccggtgtaagtggtaatatcgaaggt
aagttatatattccatatagcgatggtgttgaagtagctgaaaatgaaagtattgttgaa
gtaatcaaagaaggttggaatataccaaatcgtattccttatgcaagtgaattgctagta
aaagatggtgatcctatcactcaagatattatagcaggtgcaaaaggcacattaaaattt
tacatgctcaaaggcgatggtttagataggattaaaaatcttaaaaaaggtgatgtagtt
aaagaaaaaggtgtttttgttgttattgctgatgaaaatgatagagaagcaaaaagacat
tatataccaagagaatccgtaattgaatttgatgatagtgcttttgtggataatcctaaa
gctatcatagcaaaatcaagcaaagaagataaaactatcattgctgaatgggatgcatat
aataacaccgtaattgcagaggttgcaggtactataaattttgaagatattgaatcaggc
tatagtgccgatgaacaaattgatgaagcaacaggtaaaagatctttagtaattaatgag
tatttaccaagtggtgtgcgtccagctattttaattcttggagaaaaaggtaaaatggtt
cgttatcaattagaaccaaaaaccgttatttatgtaaatgatggagataaagttaaacaa
gcagatattttagctaaaactccaaaagcagcaacaaaatcaaaagatattacgggtggt
cttccaagagtttcagaattatttgaagcaagaaaaccaaaaaatactgccgtaattgct
gagattgatggtgtagtaagatttgataagcctttaagatcgaaagaaagaattattatt
caagctgaagatggtagtagtgctgaatatttaatcgataaatcaaaacgcattcaagta
agagatggtgagtttatccatgctggcgagaaattaactgatggagttatttcaagtcat
gatgtgcttagaattttaggtgaaaaagcattacattattatctaatttctgaaattcaa
caagtttatcgcggtcaaggtgttgtaatttctgataagcatattgaaattattgtatcg
caaatgctaagacaagtaaaaattgttgatagtggtcatacaaattttatagttggtgat
ttagtttcaagaagaaaattcagagaagaaaatgagagaattttaaaatatggtggtgaa
ccagctgtagctgaacctgtattgcttggggttacaagagcggctattggaagcgatagt
gttatttcagctgcttcattccaagaaactactaaagttttaacagaagcaagtattgca
ggtaaatttgattatttagaagatcttaaagaaaatgtaatactaggccgtatgatacct
gttggaacagggctttatagcgagcaaaacataaaacttaaacaacaaaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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