KEGG   Chlorobium limicola: Clim_0547
Entry
Clim_0547         CDS       T00766                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cli  Chlorobium limicola
Pathway
cli03420  Nucleotide excision repair
cli03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Clim_0547
   03430 Mismatch repair
    Clim_0547
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cli03400]
    Clim_0547
Enzymes [BR:cli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Clim_0547
DNA repair and recombination proteins [BR:cli03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Clim_0547
   MMR (mismatch excision repair)
    Other MMR factors
     Clim_0547
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 PcrA_UvrD_tudor AAA_30 AAA_12 DUF3878 AAA_11 DEAD ResIII
Other DBs
NCBI-ProteinID: ACD89639
UniProt: B3EGK2
Position
616974..619199
AA seq 741 aa
MTDFLRDLNDVQRSAVTATEGPVMVLAGAGSGKTRVITYRIAHLIRNNGVTPYNILALTF
TNKAAGEMRHRIDKLLQSGSASGLWIGTFHSVFARLLRSYIHLIGYDRNFSIFDSDDSKS
LIRQSMNELGITHDSLPVNAVQSIISKAKNSFILPSEFQSRPGDYNQQKAAKVYELYTRK
LRENNALDFDDLLIKPLELFRAHEAVLGELQETFRYILIDEYQDTNRAQYLAAKMLGAKH
RNIFVVGDDAQSIYSWRGADITNILNFQDDYQDSQTFKLVENYRSTGTILQAANSVIRNN
HRQIKKDLISNRSAGEPVTLIEAYNERQEGEKVVEHIRSMRQKDGHDYSGFAVFYRTNAQ
SRVLEDVMRQNRIPYRIFGSVSFYKRKEIKDAVAYLRFIVNERDNESLLRIINFPPRKIG
DVSIAKLKEYAVLQDVSLYDAIRNAAEGGFQQRLVNALESFSSVIEQLRELSEYGSVYDV
LSELYSLTAIPAQLQAENTAESLARYDNLQELLSMARDFSDHNPDSSSLGDFLENISLAS
DYDETRESDNYVSLMTVHASKGLEFPVVFITGMEERLFPLSTYEQDELEEERRLFYVAMT
RAQEKIFLSWARSRYQYGQPQQCLRSMFVTEIDASIVRTESGELLSVRGSSERASSAGSS
PARGVQPRVPSPQNGIQAPRQESKPASKGFRAGAMVHHALFGPGMILEVHGSGSGQKVKI
RFRTAGDKTLMVQYANLRIVS
NT seq 2226 nt   +upstreamnt  +downstreamnt
ttgactgattttttacgtgatcttaacgatgttcagcgcagtgcggtaaccgcgacggaa
gggccggtgatggtgcttgcaggagcgggttcaggaaaaacaagggtgattacctatcgc
attgcccatctcatcaggaataacggagtcactccatataatattctcgccctgaccttt
acgaacaaggcagcaggggagatgcgccatcgcatcgataagctgctgcagagcggcagc
gcctcgggcctctggataggaaccttccactcggttttcgcccggttgctgcgcagctat
atccacctgatcggctacgacaggaatttctcgattttcgattccgacgacagtaaaagc
ctgatccgtcagtcgatgaacgaactgggcatcacgcatgattcgctgccggtcaatgcc
gtgcagtcgattatcagcaaggcgaaaaacagctttattcttccttcggagtttcagagc
aggccgggcgattacaaccagcagaaagcggcaaaggtttacgagctctataccagaaaa
ctgcgcgagaacaatgcgcttgatttcgacgatctgctcatcaagccgctcgagctgttc
agggctcatgaagccgttctcggggagttgcaggagacattccgatacattctcatcgac
gaatatcaggataccaaccgtgcgcagtacctcgcagcaaaaatgctcggggcgaagcac
cgaaatatttttgtcgtaggcgatgacgcacagtccatctattcatggcgaggcgccgac
attaccaatatcctgaattttcaggacgactatcaggactcccagaccttcaagctggtg
gaaaattatcggagtaccggaacgattctccaggcggccaacagcgttatccgtaacaat
caccgccagatcaagaaggatctcatatccaatcgcagcgccggcgaaccggttaccctg
atcgaagcatacaacgagcggcaggagggggaaaaggttgtggagcatatccggtcgatg
cgtcagaaggatggtcatgattattcggggtttgccgtcttttaccgaacaaacgcccag
tcgagggtgctggaggatgtgatgcgtcagaaccggattccctacaggattttcgggagc
gtctctttctacaagcgcaaggagatcaaggacgcggttgcgtaccttcgtttcattgtc
aatgaacgcgataacgaatccctgctgagaatcattaattttcctccgagaaaaatcgga
gacgtcagtatcgccaaactgaaagagtatgccgttcttcaggacgtctcgctttacgat
gccatccgcaacgccgccgaggggggatttcagcagcgtctggtgaacgctctggagagt
ttcagcagcgtgatcgagcagctcagggagctgtcggagtacggcagcgtgtacgacgtg
ctcagcgaactctacagcctgacggcaattcctgcgcagcttcaggccgagaataccgcc
gagtcgctcgcgcgatacgacaatcttcaggaactgctctcgatggccagggatttttcc
gatcacaatcccgactccagttctcttggcgattttcttgagaatatatccctcgcctcg
gattacgacgagaccagggagtcggataattacgtgtcgctgatgaccgtgcacgcctcc
aaaggcctggagtttccggttgtcttcattaccggtatggaagaacggctttttccgctc
agcacctacgaacaggatgagctggaggaggagcggcggcttttttatgttgccatgacc
agagcccaggaaaaaatattcctttcatgggcgcgttcgcgttatcagtacggtcagccc
cagcagtgtttgcgttcgatgttcgtaacggaaatagatgcttcgattgtacgcacagaa
agcggcgagctgctttccgttcgaggttcgtcagagagagcctcttctgccggaagctcg
cctgcaagaggggttcagccgagggtgccgtctccgcagaacggtattcaggcgccccgc
caggagagcaaaccggcatcgaaagggttccgggcgggcgctatggttcaccatgcattg
tttggcccgggcatgattctggaagttcatggatccggatcggggcagaaagtgaaaata
aggttcagaacggcaggagacaaaacgctcatggtgcagtatgccaatctcaggattgtg
agttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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