KEGG   Campylobacter lari RM16712: UPTC16712_1197
Entry
UPTC16712_1197    CDS       T03556                                 
Symbol
uvrB
Name
(GenBank) UvrABC nucleotide excision repair complex, subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
clm  Campylobacter lari RM16712
Pathway
clm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UPTC16712_1197 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clm03400]
    UPTC16712_1197 (uvrB)
DNA repair and recombination proteins [BR:clm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     UPTC16712_1197 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      UPTC16712_1197 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 Kinesin UB2H Microtub_bd SWI2_SNF2 Focal_AT
Other DBs
NCBI-ProteinID: AJD06700
Position
1185119..1187092
AA seq 657 aa
MFKLTSDFKPSPDQKQAIDGIVKSIKAGNKYQTLLGVTGSGKTFTMANIIKNLNMPTLIM
SHNKSLCAQLYSEFKGFFANNHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLR
LSASASLLSYDDVICIASVSANYGLGNPSEYVGMVLILELNMQINQKELLKKLVDMGYKR
NDNFFDRADFRVNGDIVDIYPAYYEDEAIRLEFFGDELEAMYHYNVLENKKGKDLKKFIL
YPTSQFSVGETRLKEAIKDIKAELNERLAYFENENKLVEAQRLKQRVEFDLEMLQSTGMC
KGVENYALHLTGLKSGDTPYTLFDYFAIKNQDFLVIVDESHVSLPQFRGMFAGDRSRKQT
LVDYGFRLPSALDNRPLMFDEFINKNCKFLFVSATPAPLELELSKENIFYQIMRPTGLLD
PKIEIKDSENQVEILYDEAKKVIERNERVLITVLTKKMAEELSKYYLELGLKVKYMHSEI
DAIERNEIIRGLRSGAFDILIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTALIQTMG
RAARNVNGKVLLFAKKITKSMQEAIDTTNERRTLQEAYNKKHNITPTSVKRNIEESLKHE
LEQGEIYRKGKELEKMPAKERAKIVKELRKQMLEAAKNLEFEKAAMLRDEINKLRTL
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtttaaacttactagtgattttaagccaagtcctgatcaaaaacaagccattgatggt
atagtaaaaagtattaaagcaggcaataaataccaaaccttactaggtgttacaggcagt
ggaaaaactttcactatggcaaatatcattaaaaacttaaacatgcctactcttatcatg
agtcacaataaaagcttatgcgcgcaactttatagtgaatttaaaggcttttttgcaaat
aatcatgtggagtattttataagctattatgattattatcaacccgaggcttatatacca
aggaccgatgtttttatagaaaaagacagctctactaatgaagatttagaaagattaaga
cttagtgcaagtgcttcgcttttaagttatgatgatgttatttgtatagctagtgtttca
gcaaattatggcttaggaaatccaagtgagtatgtaggtatggttttgattttagagctt
aatatgcaaataaatcaaaaagaacttttaaaaaaacttgtagatatgggctataaacgc
aatgataacttctttgatagagctgattttagagttaatggagatatagtagatatatat
ccagcttattatgaggatgaagctattagacttgagttttttggcgatgagcttgaggcg
atgtatcattataatgtcttagaaaataaaaaaggtaaagatttaaaaaaattcatactt
tacccaaccagtcaatttagtgtaggtgagactaggcttaaagaggctataaaagacata
aaagctgaattaaatgaacgccttgcttattttgaaaatgaaaataaactcgtagaagca
caaaggttaaaacaaagagtagaatttgaccttgaaatgcttcaaagcactggcatgtgt
aaaggagttgaaaattacgctttgcatttaacaggacttaaaagcggtgatacaccttat
actctttttgattattttgccattaaaaaccaagactttttagtcattgtagatgaatcc
catgtatctttaccacaatttcgtgggatgtttgcaggggatagaagtagaaagcaaact
ttggttgattatggttttcgcttgccaagcgccttagataatagacctttgatgtttgat
gaatttattaataaaaattgtaaatttttatttgtttcagccacacctgcgcctttagag
ttagaattaagcaaagaaaatattttttatcaaatcatgcgtccaacagggcttttagat
cctaaaatagaaatcaaagatagtgaaaatcaagtagaaattttatacgatgaagctaaa
aaagttatagaacgcaatgaaagagttttaataacagttttaactaaaaaaatggctgaa
gagcttagtaaatactacttagaacttggcttaaaagtaaaatacatgcattcagaaatt
gacgcaatagagcgtaatgaaatcatccgtggtttaagaagtggtgcttttgatatttta
atcggaattaatcttttaagagaaggacttgatttacctgaagtttctcttatagccatt
atggatgcagataaagaaggctttttaagaagtaccactgcgctcattcaaacgatgggg
cgtgctgctagaaatgtcaatggaaaagtattgctttttgccaaaaaaatcacaaaatct
atgcaagaagctatcgatactaccaatgaaagaaggactttacaagaagcttataataaa
aaacataacatcacgccaacctcagtaaaaagaaacatagaagaaagtttaaaacatgaa
cttgagcaaggagaaatttatcgcaaaggcaaagaacttgaaaaaatgcctgcaaaagaa
cgcgctaaaatagtaaaagaattaagaaaacaaatgttagaagcagctaaaaatcttgaa
tttgaaaaagcggcaatgcttagagatgagattaataaattaagaactttataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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