KEGG   Columba livia (rock pigeon): 102084834
Entry
102084834         CDS       T02912                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03030  DNA replication
clv03410  Base excision repair
clv03420  Nucleotide excision repair
clv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102084834 (RFC1)
   03410 Base excision repair
    102084834 (RFC1)
   03420 Nucleotide excision repair
    102084834 (RFC1)
   03430 Mismatch repair
    102084834 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clv03032]
    102084834 (RFC1)
   03400 DNA repair and recombination proteins [BR:clv03400]
    102084834 (RFC1)
DNA replication proteins [BR:clv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102084834 (RFC1)
DNA repair and recombination proteins [BR:clv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102084834 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT Rad17 AAA_22 BRCT_2 AAA_14 AAA_5 RNA_helicase AAA_17 AAA_30 AAA_18 RuvB_N AAA_16 AAA_7 nSTAND3 AAA_33 NTPase_1 AAA_19
Other DBs
NCBI-GeneID: 102084834
NCBI-ProteinID: XP_021141709
Position
Unknown
AA seq 1163 aa
MAATPEGSDTNKDIRKFFGVVPPGKRQECETLKKREKIKNGEEPSSGKKKGKEAKVNNSP
SEDDSKQKRTNKKRRIIYDSDSEEEVQSAKKSKKPSEKKAVTSKLGKVLKRDPVVYISET
DEEDDFVNKRISLKPKENGTSATSCPGTATVKKEDVKPQAKNKPLTPVKQTPTSALDYFG
TSSVQRSEKKLVASKRKELSQSRDSTADDEAIARQLQLEEDSELERQLHEDEEFAKTLAM
LDETPQKKKARKDSGGEQSVSSIKSSPKVAEGYKQSERVKTTNLADEAMNYTAKQQTESD
HLKGSRLSPQSSGGKIVRELTDKTLPLKPSSKLVSLKQKEEIAEKERAAHTSVSREKTAS
GKQQKTTPKKEKISPKKAESVSPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENC
LEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG
TKVIDEDGLFDLIRTMPGKKSKYELAAETEGKKAESRPKRTPQKAEAGKRNLSPFKSEAD
NKKHKSTPEKRDAVKPVKKEAVRKLMDFKRQTVEKKEAPEPQGNLVSEIKEDGTEKLLWV
DKYKPVTLKAIIGQQGEQSCANKLLRWLXXXXXXXXMDKVTTKTNKTGGKDDGTGFKAAL
LSGPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEVVAESLDNTSIKDFCSGTSS
SVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKMRSLVHYCLD
LRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLT
YDEAKTDASKAKKDIKLGPFDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQENY
VHVKPAAAGGDLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGELM
RGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQP
LKDFGADGVQEAIKFMDSYCLMKEDIENIVEISTWGGKPSPFSMLDPKVKAAFTRAYNKE
AHLTPYSLTSVKTSKRQSGSVVTLELNEDLNVEEIQSEEDEQDTVESDAMIKQKKAKSSK
LPKREKNEETTKKEGKRKEKTRH
NT seq 3492 nt   +upstreamnt  +downstreamnt
atggctgcaacccctgaaggtagtgataccaacaaggacatccggaaattctttggtgtt
gtgcctcctggaaagcgacaagaatgtgagaccttgaaaaagcgtgaaaaaattaaaaat
ggtgaagaaccctcaagtgggaagaaaaaaggaaaggaggctaaggtgaataattcaccc
agtgaagatgattccaaacaaaagcggacaaacaagaaaaggagaataatatatgattca
gattcagaagaggaggtgcagtcagcaaaaaagtccaagaagccatctgagaaaaaagca
gttacttcaaagcttggtaaagttctgaagcgggatcctgttgtttatatttcagaaaca
gatgaagaagatgactttgtcaataaaagaatttccctgaaaccgaaggagaatgggaca
tcagcgaccagttgtccaggaacagcaacagtgaaaaaggaggatgtaaaacctcaagct
aaaaacaagccattaactccagtgaaacagactcccacctcagcacttgattactttggg
acaagtagcgtccaacgatcggaaaagaaactggtagcaagtaaaaggaaagaactttca
caaagcagagacagcaccgcagatgatgaggccattgctaggcaactgcagcttgaagaa
gattcagagctggagaggcagctgcatgaagatgaagaatttgctaaaactttggccatg
ttggatgaaacaccgcagaagaaaaaggctcggaaagattcaggaggagagcaatcagtg
tcgagcatcaagagcagtcctaaagtggcagaaggatataagcagtcggaaagagtgaaa
acaacaaacttagcggacgaagcaatgaattacactgcaaagcagcaaacggaatctgat
catttaaaagggtctcgattatccccacagtcatctggtggtaaaatagtaagagagttg
acagataagaccttacctttgaaacctagctctaagcttgtgtctctgaaacaaaaagaa
gagattgctgaaaaggaaagagctgctcatacttcagtatcaagagaaaaaactgcttca
gggaaacaacagaagacaacaccaaagaaggagaaaatttctcccaagaaggctgagtct
gtaagtcctgaggactctgagaagaagcgaaacaattatcaagcctaccgaagctttctt
aatcgcgagggtccaaaagcactgggttccaaagagatacctcagggagctgaaaattgc
ttggaaggcctgacattcgtaattactggtgttctggagtgtattgaaagagatgaggcc
aagtccctgattgaacgttacggaggaaaagtaactggcaatgtcagcaagaagacaaac
tatctggttatggggcgagactgtggccagtccaagtgtgagaaggcatcgactttaggg
acgaaagttattgatgaggatggcctgtttgatcttattcgaactatgccaggcaaaaag
tccaagtatgagctggcagctgaaacagagggaaagaaagcagagtcgagacctaaaagg
acaccacagaaagctgaagctggaaaaaggaatttgagccccttcaaaagcgaagctgat
aataaaaaacataagtctactcctgaaaaaagagatgctgtcaaacctgttaagaaggaa
gctgttcgaaaacttatggactttaaacggcaaactgtagagaagaaagaagccccagaa
cctcaggggaacttggtttctgagattaaggaagatggaacagagaaattgttatgggta
gataaatacaagcctgtaactctcaaggcaataattggacagcagggtgagcaaagctgt
gccaataaactgctccggtggctccnnnnnnnnnnnnnnnnnnnnnnnatggacaaggtg
accacaaagaccaacaaaactggaggcaaagatgacggtaccggttttaaagcagcgtta
ctttctggtccacctggagttggtaaaactactacagcttctttggtttgtaaggagctg
ggctatagctatgtggagctgaatgccagtgacactcgcagtaagaacagtctcaaggaa
gtagttgctgaatcacttgacaacaccagcatcaaagacttctgttctggcacatcctca
tcagttagcgggaaacatgtgttgatcatggatgaagtggatggtatggcaggcaatgaa
gacagaggagggattcaggagttgattggtttgattaaacacacaaaaatacccatcatc
tgtatgtgtaatgatcgtaaccatcctaaaatgcgttccttggtccactactgtttggat
cttcgttttcagagacctcgtctagaacagattaagggtgctatgatgtctattgcattt
aaagaaggtttaaaaattccaccacctgctatgcaagagataatcctggcagcaaatcag
gacatcagacaggttttacataatcttaatatgtggtgtgcaaaagataaatcgttgact
tacgatgaggctaaaacggatgccagcaaagccaaaaaagatatcaaactgggccctttt
gatgttgtccggaaggtttttgctgctggagaggaggcttctcgtatgtctcttatagac
aaatcggatcttttcttccatgattattcccttgcacctctctttgtccaagagaactat
gtacatgtgaaaccagctgctgctggaggagatctgaaaaagcacttggtgctcttgagt
agagcagctgatagcatatgtgatggtgatatagtggacaaacagattcgtagtaagcaa
aactggaatcttcttccgacacaggctatttatgcaagtgttctccctggggagctgatg
agaggatacatgtcccagtttcctgtgtttcccagctggctggggaaattttcatccaca
ggcaaacatgatcgtataattcaagaactggcaatgcacatgagtctcagaacccagacg
tgcaagcggacagtgaatatggagtatttgtcgtatttgcgggatgcgcttgtccagccc
ttgaaagactttggagcagatggagtacaggaagctataaagttcatggactcctactgc
ctgatgaaagaagatattgaaaatatcgtggaaataagcacatggggaggcaaacccagt
cctttttcaatgttggatcctaaggtcaaagcggcttttacacgtgcctacaacaaggag
gcacatctgactccatattcacttacttctgtcaagacatctaaaaggcagtcgggatct
gtggtgaccttagaactgaatgaagacttgaatgtggaagagatacaatctgaagaggat
gagcaagatactgttgaaagtgatgcaatgattaagcaaaaaaaggcgaagtcttccaag
ctgccaaaaagagagaaaaatgaagaaacgacaaaaaaggaagggaaaaggaaagagaaa
acaagacattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (47)   

Download RDF
DBGET integrated database retrieval system