KEGG   Chlorobaculum limnaeum: BIU88_00390
Entry
BIU88_00390       CDS       T04492                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
clz  Chlorobaculum limnaeum
Pathway
clz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:clz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BIU88_00390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clz03021]
    BIU88_00390
   03400 DNA repair and recombination proteins [BR:clz03400]
    BIU88_00390
Enzymes [BR:clz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BIU88_00390
Transcription machinery [BR:clz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BIU88_00390
DNA repair and recombination proteins [BR:clz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BIU88_00390
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: AOS84934
UniProt: A0A1D8D7W5
Position
86540..90445
AA seq 1301 aa
MADATPTPCIDFSKIQSIVTPPDLLKVQLDSFHNFIQDSVPLEKRKDQGLEKVLRSAFPI
TDTRGLYLLEYISYSFDKPKYTVEECIERGLTYDVSLKIKLKLSYKDEADEPDWKETIQQ
EVYLGRIPYMTERGTFIVNGAERVVVAQLHRSPGVVFSEAVHPNGKKMYSAKIVPTRGSW
IEFQTDINNQIFVYIDQKKNFLVTALLRAIGFARDEDILGLFDLVDEVEVSSKSSKREQL
LGQYLASDIIDMNTGEVVPARAAITEEILEQIVMADYKKVKVMKASSPEKGVDKSVIINT
ILNDSSATEEEALEIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIQKKLQ
TELADLSAFLNEKPELKELSDAIYERILQTIRTYSEEPIGDDILVLTHYDIIAVINYLIK
LVNGNAEVDDVDHLANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDTDKIAPADLIN
ARTVSSVVSSFFATSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTH
YGRLCPIETPEGPNIGLISSLSVYAEINDKGFIQTPYRVVDKGQVTDTVLMLSAEDEENK
ITVPVSIPMDENNRIAAESVQARTKGDYPLVLAEDVNYMDVSPVQIVSAAAALIPFLEHD
DGNRALMGANMQRQAVPLLVSDAPVVGTGMEAKVARDSRAVIVAEGPGVVQSVTADRIEV
RYDLDPENATVSLLDPDEGVKVYKLIKFKRSNQDTCISQRPLVRNGQRVDTGDVLADSSS
TDNGELALGKNVLVAFMPWRGYNFEDAIVLSERLVYDDVFTSIHVHELESNVRDTKRGEE
QFTRDIYNVSEEALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGN
KSSDVKDASMHVPAGMKGIVIKTKLFSRKKKVGMDVKEKMEAIDKQFDLKEADLRKRFAK
WMKQHLDGKKSVAIQSDKGKVLVAEGTIIGDELLAKFNGLPFLESIDVTKGIVTGAKTNE
NVVRLIREYRLKLKDLADERENEKYKINVGDELPPGIEELAKVYIAQKRKIQVGDKMAGR
HGNKGVVGKILPIEDMPFMADGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFK
TPIFNGATYAEVQEQLENAGLPGHGKVKLFDGRTGEQFHDEVTVGYIYMLKLSHLVDDKI
HARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNK
TYEAIVKGQNLPEPGTPESFNVLVRELQGLGLEIRIDDRVP
NT seq 3906 nt   +upstreamnt  +downstreamnt
gtggctgatgcaacaccaacaccctgtattgacttttctaagatccagagtatcgtaacc
ccccccgaccttctcaaggtacagctcgattcgtttcataatttcatccaggacagcgtt
ccccttgaaaaacgcaaggatcagggccttgaaaaagtgctcaggagcgcctttccaatt
accgataccagggggctctatctcctggaatatatttcttacagcttcgacaagcccaag
tatactgtcgaggagtgcatcgagcgcggcctgacctacgatgtgtcgctcaagatcaaa
ctcaagctctcctacaaggacgaggccgatgagccggactggaaagagaccatccagcag
gaggtctatctcggcaggattccctacatgaccgagcgaggcaccttcatcgtcaacggc
gccgagcgcgtcgtggtggcgcagcttcaccgttcgccgggcgtggtgttcagcgaggcg
gtgcatcccaatggcaagaagatgtactcggccaagatcgtgccgacccgcggttcctgg
atcgagttccagaccgacatcaacaaccagatttttgtctatatcgaccagaagaagaat
ttcctggtcaccgccctgttgcgcgccatcggtttcgccagggacgaggatattcttggt
ctgttcgacctggtcgatgaggtcgaggtctcctcgaaaagctcgaagcgtgagcagttg
ctcggccagtatctcgcttcagatatcatcgacatgaacaccggcgaggtcgttcccgca
agggcagccattaccgaggagatcctggagcagatcgtcatggccgactacaaaaaggtc
aaggtgatgaaggcctcctcaccagagaaaggcgtggacaagtcggtcatcatcaatacg
attctcaacgacagctccgccaccgaggaagaggcactcgaaatcgtctacgaggagctt
cgcgccaacgaagcgccggacatcgatgccgcaaggagcttcctcgaacgcaccttcttc
aatcagaaaaaatacgatctcggcgatgtcggacgctaccgcatccagaagaagcttcag
accgagcttgccgacctgtcggcattcctcaacgaaaagccggagctgaaggagctttcc
gacgctatctacgagcgcattctccagactatccgcacctactccgaggagccgatcggc
gacgatattctcgtgctgacgcactacgatatcatcgcggtcatcaactacctcatcaag
ctggtcaacggcaatgccgaggtcgatgacgtcgatcacctggccaaccgccgcgtgcgt
tcggtgggcgagcagctcgccgcgcagttcgtgatcggcctggcgaggatgggcaagaat
gtccgcgagaaactcaactcgcgcgataccgacaagatcgctcctgccgatctcatcaac
gcgcgtaccgtctcgagcgtggtgtcgagcttcttcgccaccagccagctctcgcagttc
atggaccagaccaaccctctggccgaaatgaccaacaagcgccgcgtgtcggctctcggc
ccaggcggtctgacccgcgagcgcgcaggcttcgaggttcgcgacgttcactacacgcac
tacggacgcctctgcccgatcgagacccctgaaggtccgaacatcggtctgatctcgtcg
ctctccgtttacgctgaaatcaatgacaaaggcttcatccagacgccataccgcgtcgtc
gataaaggtcaggtcaccgatacggtactgatgctctccgcggaggacgaggagaacaag
atcaccgtgccggtcagcattccgatggacgaaaacaaccgcatcgctgcggagtcggtg
caggccagaaccaagggcgactatccgctcgtgctggccgaggatgtgaactacatggac
gtctcgccggtgcagatcgtcagcgcggcggcggcgctcattccattcctcgagcacgat
gatggcaaccgcgcgctcatgggcgcgaacatgcagcgccaggccgtgccgctgctcgtt
tccgacgctccggtggtcggcaccggcatggaggccaaagtcgcccgtgactcccgcgcg
gtgatcgtggccgaaggtcccggcgtggtgcagagcgtcacggccgatcgcatcgaggtg
cgttacgacctcgatccggagaacgccaccgtgtcgctgctcgatcccgacgaaggcgtc
aaggtctacaaactcatcaaattcaagcgctcgaaccaggacacctgcatttcgcagcgt
cccctggtgcgcaacggccagagggtcgataccggcgacgtgctcgccgacagctcctcg
accgacaacggcgaactggcgctcggcaagaacgtgctcgtagctttcatgccctggcgc
ggttacaacttcgaggacgccatcgtgctcagcgaaaggctggtgtacgacgacgtcttc
acctcgattcacgtgcacgagctcgaatcgaacgtgcgcgacaccaagcgtggcgaggag
cagttcacccgcgacatctacaatgttagcgaggaggctctgcgcaacctcgacgagaac
ggcatcgtgcgcatcggcgccgaggtcaaggagcgcgatatcctcgtgggcaagatcacc
ccgaagggcgagagcgatcctacacccgaagagaagctgctgcgcgccatcttcggcaac
aagtcgagcgacgtcaaggacgcttcgatgcatgtgcctgccggcatgaagggcatcgtc
atcaagaccaagctcttcagtcgcaagaagaaggtcggcatggatgtcaaggagaagatg
gaggccatcgacaagcagttcgacctgaaagaggccgacctgcgcaagcgcttcgccaaa
tggatgaagcagcacctcgacggcaagaagagcgtggcgatccagagcgacaagggcaaa
gtgctcgtggctgaaggtaccatcatcggcgacgagctgctggcgaagttcaacggcctg
ccgttcctcgaatcgatcgatgtcaccaaaggcatcgtgaccggcgcgaagaccaacgag
aacgtcgtccgcctgatccgcgaataccgcctcaagctgaaggatctggccgacgagcgc
gaaaacgagaaatacaagatcaatgtcggcgacgaactgccgcccggcatcgaggagctg
gccaaggtctatatcgcacagaagaggaaaatccaggtcggcgacaagatggcaggccgt
cacggtaacaagggcgtggtcggcaagattctgccaatcgaggacatgcccttcatggcg
gatggaactccggtcgatattgtgctcaacccgcttggcgtgccgagccgcatgaacatc
ggccagctttatgaaacctcgctcggatgggctggcaagaagctcggcgtgaagttcaag
accccgatttttaacggtgctacctatgccgaggtgcaggagcagctcgaaaatgccggt
ctgccgggtcacggcaaggtcaagctttttgacggtcgcaccggtgagcagttccatgac
gaggtcacggtcggctatatctatatgctcaagctgagccaccttgtcgacgacaagatt
cacgccaggtccatcggcccatactcactcatcacccagcagccgctcggcggaaaggcg
cagttcggcggccagaggttcggtgaaatggaggtgtgggcgctcgaagcatacggcgcg
gccaacatcctgcgcgagatgctcacggtcaaatccgatgacgtgatcggcagaaacaaa
acctacgaggcgattgtcaagggacagaatcttccggaacccggaacgcctgaatcgttc
aacgttcttgtcagggagctgcagggtcttggtctcgaaatcaggatcgacgacagggtg
ccctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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