KEGG   Celeribacter marinus: IMCC12053_1488
Entry
IMCC12053_1488    CDS       T04098                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cmar  Celeribacter marinus
Pathway
cmar03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cmar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    IMCC12053_1488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmar03021]
    IMCC12053_1488
   03400 DNA repair and recombination proteins [BR:cmar03400]
    IMCC12053_1488
Enzymes [BR:cmar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     IMCC12053_1488
Transcription machinery [BR:cmar03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     IMCC12053_1488
DNA repair and recombination proteins [BR:cmar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      IMCC12053_1488
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ALI55435
UniProt: A0A0P0A9T0
Position
complement(1465444..1469583)
AA seq 1379 aa
MASTFLGQKRLRKYYGKIREVLEMPNLIEVQKASYDLFLNSGDAPEPLDGEGIKGVFQSV
FPIKDFNETSVLEFVKYELETPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDVVFARIDRRRKLPVTTLLYALGLNQESICDAYYETVDYKLEK
NKGWVTKFFPERVRGTRPTFDLVDAATGELICKAGEKMTPRKVKQIIDSGEITELLVPYD
NIVGRYIAKDIINEDNGAIYIEAGDELTLEYDKDGDVIGGTLFDLQNAGVTDLPVLDIDG
VNVGAYIRNTLAVDKNMNRETALMDIYRVMRPGEPPTVEAAGNLFDSLFFDGERYDLSAV
GRVKMNMRLALDKEDTQRTLDRDDIVKCIKALVELRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHITHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRRVVDGQVTDEVQYMSATEEMRHTVAQANASLDETGRFTNDFVSTRQSG
EHALNPPENVDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPVV
GTGMEGKVAIDSGAAIQAARAGIIDQVDATRIVVRATSDLGLGDAGVDIYRLRKFQRSNQ
NTCINQRPLVKVGQAVGKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISER
IARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAHVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERSVQIEREEIERLARDRDDEMAILDRNIYARLKEQLLGKTAVKGPKGVKANVVVDEDL
LSQLSKGQWWQLALEGEADAQIVEALNGQYDVQKRALEHRFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWASRALGIQVDEALQEYRRSGDMTPVRDALKFVYGDDVYAEGFESMDDDL
MLEAASNVTAIGVPIATPVFDGAKEADIDDALMRAGFDTSAQSVLFDGRTGEQFARKVTV
GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRAKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEDEE
NT seq 4140 nt   +upstreamnt  +downstreamnt
atggcttcgaccttcctcggccagaaacggctccgcaagtattacggcaaaatccgtgaa
gttctcgaaatgccgaacctcattgaggttcaaaaggcatcctatgacctgttcttgaac
tccggcgatgcgcccgagcctctcgacggcgaagggatcaaaggcgttttccagtcggtc
ttcccgattaaggatttcaacgagacgtccgtgcttgagttcgtaaaatacgagctggaa
actcccaaatacgatgtcgaagaatgtcagcagcgcgacatgacatactccgcaccgctc
aaagtcactttgcgccttatcgtgtttgatgtggatgaggatacaggcgcgaagtccgtt
aaggacatcaaagagcaagacgtgttcatgggcgatatgccactcatgacgccgaacggc
acgtttgtcgttaacggcacagagcgcgtgattgtgtcccagatgcaccgttcgcctggc
gtgttctttgaccacgacaagggcaaaacccactcgtcgggcaaattgctattcgcttgc
cgcattattccgtatcgtggatcttggttggacttcgagtttgatgccaaagacgttgtc
tttgcgcgcatcgaccgtcgccgcaagcttcctgttacaaccttgttgtacgctctgggc
ctcaatcaagagtccatttgtgacgcgtattacgaaaccgttgattacaagcttgagaag
aacaaaggttgggtgaccaagttcttccctgagcgtgtacgcggaacgcgtccgacattc
gatctggtcgacgcagctacaggtgagttgatctgtaaagctggcgagaagatgacccct
cgcaaggtcaaacagattatcgatagtggtgaaatcaccgagttgctcgttccctacgac
aacatcgttggtcgctacatcgctaaagacatcatcaacgaagacaacggcgcgatttat
atcgaggctggcgacgagttgacgctcgagtacgacaaagacggtgacgttattggcggt
actttgttcgatctgcaaaacgcaggtgtcacggaccttccggttcttgatatcgatggc
gtgaacgtgggtgcctacatccgcaacacgcttgctgtagataaaaacatgaaccgcgaa
accgcgctcatggacatctaccgcgtgatgcgcccgggcgagccgcccaccgttgaagcg
gcaggcaatctctttgatagcctgttctttgatggcgaacgttatgatctgtccgcggtt
ggccgtgtgaaaatgaacatgcgtcttgctctcgataaagaagacacgcagcgtacgctt
gatcgtgacgatatcgtcaagtgtatcaaagcacttgttgaattgcgtgacggtcgtggc
gacatcgacgacattgaccacctcggcaaccgtcgtgtgcgttctgttggcgaattgatg
gaaaaccaataccgcgttggtctgttgcgtatggagcgcgcgattaaagagcgtatgtcg
tccgttgagatcgacacggtcatgccgcaagacctcatcaatgcgaaacctgcggcggct
gccgttcgcgaattcttcggttcctcacagctgtcgcagttcatggaccaaaccaacccg
ctctccgaagtgacgcacaagcgccgcctctccgcgcttgggccaggtggtctgacgcgc
gaacgtgcaggctttgaggtccgtgacgttcacatcacgcactacggtcgtatgtgtccg
attgagactcccgagggtccgaacattggtttgatcaactcgctcgcgacctttgcacgg
gtgaacaagtacggcttcatcgagacaccataccgtcgcgttgttgacggtcaggtgact
gacgaagttcaatacatgtccgcaaccgaagagatgcgtcacactgtggctcaggccaac
gcatcgctcgacgaaaccggccgttttaccaacgatttcgtatccacacgtcagtcgggc
gagcacgcgctcaacccgcctgaaaacgtggatttgatcgacgtatcgccaaaacagctg
gtctcagttgctgcggcgcttatcccgttccttgaaaacgatgacgccaaccgcgctctc
atgggttctaacatgcaacgtcaggctgtgcctttgttgcgtgctgaagcgcctgtggtg
ggaaccggtatggaaggcaaagttgctatcgactctggtgctgcgatccaagccgctcgt
gctggtatcattgaccaagttgatgcgacgcgtatcgttgtacgcgccacgtctgatcta
ggtcttggcgatgctggtgtggacatctaccgtctgcgtaagttccagcgttccaaccaa
aacacctgtatcaaccagcgtccattggtcaaagtaggccaagctgttggtaaaggcgaa
gttatcgctgacggtccgtccacagatatgggcgagctggctctgggtaaaaacgtgatc
gtcgcgtttatgccttggaatggctacaactacgaagactccattctgatctccgagcgc
atcgcgcgtgacgacgtattcacatcggttcacatcgaagaattcgaagtcgcggcccgc
gatacgaaactcggcccagaggaaatcacccgcgatattccgaacgttggcgaggaagcc
ctgcgcaacctcgacgaagccggtatcgtgtatatcggtgctcacgttgagcccggcgat
atccttgtgggtaagattacaccaaagggcgaaagcccgatgacgccggaagaaaaactc
ctgcgcgccatctttggtgaaaaagcttccgacgtgcgcgacacctcgttgcgtgtgaag
cccggtgactacggtacagtcgtggaagtgcgcgtctttaaccgtcacggcgtcgaaaaa
gacgagcgttcggttcagatcgagcgtgaggaaatcgaacgcctcgcccgcgaccgtgac
gacgagatggcgatccttgatcgcaacatctacgcccgtctcaaagagcagttgctcggc
aaaactgccgtcaaaggccccaaaggtgtgaaagccaatgtggttgttgatgaggacttg
ctgtcgcagctatccaaaggtcaatggtggcaactcgccctcgagggtgaagctgatgcg
caaatcgtcgaagcgctaaacggccagtacgatgttcaaaaacgtgcgcttgagcaccgc
tttgaagacaaggtcgagaaagtgcgccgcggtgacgatcttccacccggtgtgatgaag
atggtcaaagtctttatcgccgtgaagcgcaagcttcagccaggtgataaaatggccggt
cgtcacggcaacaaaggtgttatttcccgcgttgttccgatggaagacatgccgttcctt
gccgatggtactcccgtcgatttctgtctcaacccgctcggcgtgccatcgcgtatgaac
gtcggtcagatccttgagacacacatgggttgggcgtcccgtgcgcttggtattcaagtg
gacgaagcgcttcaggaataccgtcgttccggcgatatgactcctgtgcgtgacgcgctc
aaattcgtctacggcgatgacgtgtacgccgaaggctttgaaagcatggatgacgatttg
atgctcgaagcggcatcgaacgtgaccgcgatcggtgttccgattgcaacacctgtcttt
gacggtgcgaaagaggccgatatcgacgacgcattgatgcgcgccggtttcgacacctct
gcacaatcggtgctcttcgatggccgtacgggcgagcaattcgcacgtaaagtcaccgtt
ggcgtcaaatacctgctcaaactgcaccaccttgtggacgacaaaatccacgcccgttcc
acgggtccatactcgctcgtcacccagcagccgctcggtggtaaggcgcagttcggtggt
cagcgctttggtgagatggaagtctgggcactggaagcatatggcgcggcatacacgctg
caagagatgcttacagtcaaatcggatgacgttgcaggtcgtgccaaggtctacgagtcg
atcgtcaagggcgaagacaactttgaagcggggatccccgaaagcttcaacgtgcttgtc
aaagaagtccgtggcctcggcctgaacatggaactcctggatgcggaggatgaggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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