KEGG   Cucurbita maxima (winter squash): 111492035
Entry
111492035         CDS       T05246                                 
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111492035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111492035
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111492035
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111492035
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 111492035
NCBI-ProteinID: XP_022996959
UniProt: A0A6J1K881
Position
Unknown
AA seq 274 aa
MSMFPKAESIYIREVWNHNLEEEFALIREVVDQFNYIAMDTEFPGVVLRPVGNFKNINEY
NYRTLKDNVDILNLIQLGLTFSEENGNLPTCGTDKYCIWQFNFREFNITEDIYATDSIQL
LRDSGIDFKKNKEEGIDVNRFSELLMSSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQILP
DTQEEFFDLIHTYFPMVYDVKHLLKFCNSVYGGLSKVAETLEIERVGVCHQAGSDSLLTA
CTFRKLRDTFFSGSTQKYAGVLYGLGVENEPSTD
NT seq 825 nt   +upstreamnt  +downstreamnt
atgtcgatgtttccgaaagctgagtcgatctatatccgtgaggtgtggaaccataattta
gaggaagagtttgctttaatacgtgaagtcgtcgaccaattcaactacatagcgatggat
accgaattccccggcgtggttctgcgccctgtgggtaattttaagaatatcaacgagtat
aactaccgaaccctcaaagacaatgtcgacattttgaatttgattcagttgggtcttacc
ttttccgaagagaatgggaatcttccaacatgtggtaccgataagtattgcatttggcaa
ttcaatttccgcgagttcaacattactgaagatatttatgcaactgattcgattcagctt
ttgcgcgactctggaattgatttcaagaagaacaaagaagaaggtattgatgtcaaccgc
ttcagtgagcttctcatgtcatccgggattgtcttaaacgatagtgtttactgggtgacg
ttccacagcgggtatgattttgggtacttgctgaaattgttgacttgccaaatcttacca
gacacccaggaggagttttttgatttgatccatacgtatttcccaatggtttatgatgtc
aagcatttgttgaagttttgcaacagtgtctatggtgggctcagcaaggttgcagaaaca
ttagaaattgagagggttggagtttgtcatcaagcaggatcagatagcctccttactgcc
tgtactttcaggaagttaagggatacatttttcagtggatctacacagaaatatgccggt
gttttatatggtctcggtgtcgaaaatgaaccgtctactgattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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