KEGG   Cucurbita maxima (winter squash): 111498124
Entry
111498124         CDS       T05246                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111498124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmax03041]
    111498124
Enzymes [BR:cmax01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111498124
Spliceosome [BR:cmax03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    111498124
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    111498124
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N AAA_22 DEAD AAA_19 PWI nSTAND3 AAA_30 AAA_16 ABC_tran
Other DBs
NCBI-GeneID: 111498124
NCBI-ProteinID: XP_023005006
UniProt: A0A6J1KTQ9
Position
Unknown
AA seq 1047 aa
MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETL
AFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRE
TENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQ
LERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSKALENDGTDTLRKVSRQEYLKKREEKK
LEEIRDDIEDEQYLFDGVKLTEVEYRELRYKKEIYELVKKRIDEADEINEYRMPEAYDQE
GGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEEHQIGKASMKFGSKNKKQADDYQFV
FEDQIEFIKASVMEGDEFVDEHQIESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVN
DYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLG
HEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLAGYSVIMVDEAHERTLSTDVLFG
LVKDIARFRPELKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDA
AIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTE
LQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMESLQVSPI
SKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHD
LVNFDFMDQPPSEALLKALELLYALGALNKLGELTKMGRRMAEFPLDPMLSKMMVASEKH
KCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNY
STQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAK
LQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWAVYHELVCTSKEYMRQVTELKPEWLVEIA
PHFYQLKDVEDLSQKKMPRGQGRPAEN
NT seq 3144 nt   +upstreamnt  +downstreamnt
atggggggagaaaatgacatgaaaacgtggatttctgatcagttaatgtcactgcttggt
ttctctcagccaacgattgtacagtatatgattggactatccaaacaagcagcatcacct
gccgatgtagtgagcaagttggtggtggattttggcttgccatcttccaatgaaacattg
gcttttgctgaaggaattttctctagagtgccacgcaagaaatcaactggtttaaatctt
tatcagaagcaagagagagaagctgcaattttagcaagaaatcaaaaaaaatacacacta
ctcgatgctgacgacgaagaggttcttgaagataaaggaggcagtggtgatccccgagaa
acagaaaatcgcaaaaaacgctttagaaagaaaaacgaatatcaagaagatgaagatgat
gaggaagaaagtgctcttgaaagagaaaataggcaggttaaaagacggacttccagttct
gaagacgatggctctgagtcggaggaagagcgacagcgtgatcaaagagagagggagcaa
ttagagcgaaatataagagaacgtgatgctgctggaaccaaaaagttaacagaacagaaa
ttgagcaggaaggaggaagaagaggcaattcggagatccaaagctttggagaatgatgga
actgatactttgaggaaagtttcaagacaggagtacttaaagaaaagggaggagaagaaa
ctggaagaaatcagagatgatatagaagatgagcaatatctttttgacggtgtgaagctt
actgaagtagaatatcgggagctaaggtataagaaagaaatatatgagcttgtgaagaag
cggatagacgaggctgatgaaatcaatgagtacaggatgcctgaagcttatgatcaggaa
ggaggtgttaatcaggataagaggtttgcagtggcaatgcagcggtatagggattcaggt
gctgcagataaaatgaacccatttgcagaacaagaggcatgggaggaacaccaaataggg
aaagcatcaatgaaatttggttccaaaaataagaagcaagccgatgattatcagtttgta
tttgaggatcagattgagtttattaaggcttcagttatggaaggtgatgagtttgttgat
gaacatcagattgaatcacttgaaaagtccaaagctaagtcagctctggagaagctgcag
gaagagagaaaaacattgccaatttatccatatcgtgatcagttactccaagctgtaaat
gattatcaggttcttgtaattgtcggtgaaactggttcgggaaaaaccacacagattcct
caatatcttcatgaagctgggtacacaaagcgaggaaaagttggatgcacacaaccgcgt
cgagttgctgctatgagcattgctgcccgagtatctcaagaactgggtgtcaagcttggc
catgaggttggttattcaatacgttttgaggattgcacgtcagataagactattttgaag
tacatgacagatgggatgttgttacgagaattccttggcgaacctgaccttgcaggctac
agtgttataatggtggacgaggctcatgaaagaacattatcaactgatgtcctgtttggg
ttagtgaaggatattgcaaggtttcgacctgagttgaaattgctaatttcaagtgcaaca
cttgatgcggagaagttcagtgattactttgattcagctccaatatttaaaattcctggt
agacgatatcctgtagaaattaacttcacaaaagctccagaagcggactatttagatgca
gcaattgtgactgcgcttcagattcatgtcacaaagcctccaggagatatattggtgttt
ctcactggtcaagaagagattgaagcagctgaggaaataatgaaacatagaactcgagga
ctaggcacaaaaattgccgaactcattatctgccccatatatgccaacttaccaacagag
ctacaggctaagatatttgaacccacacccataggagcaaggaaagttgtcctggcaact
aatatagcagagacatcattaacgattgatggaataaaatatgttattgatcctggcttt
tcaaaaataaaatcctataatccaaggactgggatggagtcgttgcaagtgagtcccatt
tctaaagcatcagcaaaccaaagagcaggccgttctggacgaacaggtcctggaatgtgc
tttcgtttgtatactgcttatagttattataatgagatggaagacaatacagttccagaa
attcaaagaacaaaccttgctaatgtcgtgcttacacttaagagccttggtattcatgac
ttggtaaattttgattttatggaccaacctccatctgaagcactgctaaaagctttggaa
ctgctctatgcacttggtgctttaaataaactgggcgaactgactaagatgggcaggcgg
atggctgagtttcctcttgatcccatgctttccaagatgatggttgcttctgagaagcac
aagtgttcagatgagattatttctattgcagctatgctttctattggaaattctatcttt
tatcgcccgaaggataaacaagttcatgctgacaatgctcgaatgaattttcacactggg
aatgtgggggatcacattgcattgctgaaggtctacaactcttggagggaaacaaattac
tctacgcaatggtgctatgagaactacatccaggttagaagtatgaaacgtgctagagat
atcagagatcaacttgaagggctattagaaagggttgaaattgaactgacttcaaatttg
aatgacttggatgcaataaagaagaccataatatctggttttttccctcactctgcaaag
ttacaaaagaatggctcgtatcggaccattaagcatccacagacagttcatatacatcca
agctcagggttggctcaggttcttcccagatgggctgtgtaccatgaattagtatgtacc
tcaaaggaatatatgagacaggtaacggaattgaagcccgaatggttggttgaaattgct
ccacatttctatcagcttaaagatgtcgaagatttgagtcaaaagaagatgcctcgcgga
caaggtcgacctgcagagaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (12)   
   Pfam (12)   
All databases (28)   

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