KEGG T02530: CMN

Clavibacter nebraskensis: CMN_01630

Entry

CMN_01630         CDS       T02530

Name

(GenBank) topoisomerase II, subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

cmc Clavibacter nebraskensis

Brite

KEGG Orthology (KO) [BR:cmc00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmc03032]
    CMN_01630
   03400 DNA repair and recombination proteins [BR:cmc03400]
    CMN_01630
Enzymes [BR:cmc01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     CMN_01630
DNA replication proteins [BR:cmc03032]
Prokaryotic type
  DNA Topoisomerases
   CMN_01630
DNA repair and recombination proteins [BR:cmc03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CMN_01630

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c

Other DBs

NCBI-ProteinID:

CCE75576

UniProt:

M5BDD2

Position

1701976..1704054

AA seq 692 aa
MAASDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGHGDLID
VRLHPDGSVEVRDTARGVPVDIEPKTGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVGA
SVVNALSERLDVEVDRGGKTYAMSFRRGEPGIFDDPGEATPDSPFRPFTSGSELRVVGKV
RKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLRIDIEDLRGDQPVRESF
RFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTDGGAMVPTELTRECAVDIALR
WGTGYDTRFKSFVNIISTPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLEKDDVL
AGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMAERFASTRREDKAQTAVLL
EKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDSALGTA
KLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRTFDLSAARYGKI
IIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPNDVIYTY
SERELAAVLAQAKRQGKRYQDPIQRYKGLGEMDADQLATTTMDRRNRTLRRVRVDDAEAA
ARMFELLMGNDVAPRKEFIIDGAGSVRDRIDV

NT seq 2079 nt +upstreamnt +downstreamnt
gtggcagcatccgattattccgcccgtcacctctccgtcctcgagggcctcgaggcggtg
cgcaagcggcccggcatgtacatcggatcgaccgactcgcgcggtctcatgcactgccta
tgggagatcatcgacaacagcgtggacgaggctctcggcggccacggcgacctgatcgac
gtgcggctccatccggacggcagcgtcgaggtccgcgacaccgcacgcggggtgcccgtc
gacatcgagcccaagaccggcctctccggcgtcgaggtcgtcttcaccaagctgcacgcc
ggcggcaagttcggatccggctcctacgcctcctcgggcggactgcacggcgtgggcgcc
tccgtcgtcaacgccctgtcggagcgcctcgacgtcgaggtcgaccgcggcggcaagacg
tacgccatgtcgttccgccgcggcgagccgggcatcttcgacgacccgggcgaggcgacc
cccgactcgccgttccgccccttcacgtccggcagcgagctgcgggtcgtcggcaaggtg
cgcaagggcgtcaccggcacgcgcatccgctactgggccgaccggcagatcttcacccgc
ggcgcgtccttcctcaccgaggagctcctcggccgcgcgcgccagaccgccttcctcgtg
cccgggctccgcatcgacatcgaggacctgcgcggcgaccagccggtgcgggagtcgttc
cgcttcgacggcggcatcgccgagttcgtcgaccacctggcggtcgacgcgccgctcacc
gacacgtggcggctcgagggatccggcaccttcaccgagacggtgcccgtcctcaccgac
ggcggcgccatggtgccgaccgagctcacgcgcgagtgcgccgtcgacatcgcgctgcgc
tggggcacgggctacgacacccgcttcaagtcgttcgtcaacatcatctcgacgcccaag
ggcggcacccaccaggccggcttcgaggcgggcctgctcaagttcgtgcgcgcgcaggtc
gaggccaacgcgcgcaagctcaaggtcggcaccgacaagctcgagaaggacgacgtgctc
gccggcctcaccgccgtgctcacggtgcgcttccccgagccgcagttcgagggtcagacc
aaggaggtgctgggcacgcccgcggtgcgcgccatcgtgtcccaggtcgtgcagaaggcc
atggccgagcgcttcgcgtcgacgcgccgcgaggacaaggcgcagaccgccgtgctcctc
gagaaggtcgtgggggagatgaagtcgcggatctccgcgcgcacccacaaggagacgcag
cgccggaagaacgcgctcgagagctcgtcgctgccggcgaagctcgtggactgccggtcc
aacgacgtcgccaacagcgagctgttcatcgtcgagggcgactcggcgctcggcacggcg
aagctcgcgcgcgacagcgagtaccaggcgctgctccccatccgcgggaagatcctcaac
gtccagaaggcgtcgctgcccgacatgctctccaacacggagtgcgcttcgatcatccag
gtgctgggcgcgggttccggccgcacgttcgacctgtcggcggcgcgctacgggaagatc
atcatcatgagcgacgccgacgtcgacggcgcccacatccgcacgctgctgctcacgctc
ttcttccggtacatgcggcccatgatcgacgagggccgcgtgttcgccgccgtgccgccg
ctgcaccgggtggtggtcatgaacccggggtccaagcccaacgacgtgatctacacctac
tccgagcgcgagctcgcggcggtgctcgcccaggccaagcggcagggcaagcgctaccag
gaccccatccagcgctacaagggcctcggggagatggacgccgaccagctggcgacgacc
acgatggaccgccggaaccgcacgctccgccgcgtgcgcgtcgacgacgccgaggccgcc
gcccgcatgttcgagctgctcatgggcaacgacgtcgcgccccgcaaggagttcatcatc
gacggcgccggatccgtgcgggaccgcatcgacgtgtga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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