KEGG   Cyanidioschyzon merolae: CymeCp185
Entry
CymeCp185         CDS       T00175                                 
Symbol
rpoC
Name
(RefSeq) RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CymeCp185 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cme03021]
    CymeCp185 (rpoC)
   03400 DNA repair and recombination proteins [BR:cme03400]
    CymeCp185 (rpoC)
Enzymes [BR:cme01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CymeCp185 (rpoC)
Transcription machinery [BR:cme03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CymeCp185 (rpoC)
DNA repair and recombination proteins [BR:cme03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CymeCp185 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Biotin_lipoyl_2 Cas9-BH
Other DBs
NCBI-GeneID: 844996
NCBI-ProteinID: NP_849117
UniProt: Q85FR6
Position
CP:131458..136488
AA seq 1676 aa
MCDAIQIRLASPERIRSWAERVLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPVK
DWECHCGKYKKVRYKGIVCERCGVEVTESKVRRHRMGYIDLAAVVSHVWYLKGPPSYLAL
FLNMSSSEVEQVIYFHSYVVLQSTTELVQPKQLLSEDELIILEERLANQPFQVGIGAQAI
QYLLQQLDLDMEIRVLRNQLFHAKSSKREKLMKRLRILDNFASTGADPSWMILSVLPVIP
PDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLQEILAPEIIIRNEKRMLQEAVDAL
MDNGRRGRSVVGANNRALKSLSHILEGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLYQC
GLPKEMALELFQPFVIQRLMAQGLANNMKAAKKIIQRKEAIVDQILHQVVKAHPVLLNRA
PTLHRLGIQAFDPILVDGRAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQAEARLLMLS
VNNFLSPATGDAIIMPSQDMVIGCYYLTANNPASQAKQSHYFADFEHVLMAFEQKQINLH
TWVWVHVNNNLNIILERSALQEDWIQTRGESLFLKTTPGRIIFYQQAAYHVGFYNLTINK
SHLKELVKTVYNLKGMACATQLADDLKQLGFHYATTCGLSLGIEDLRVAPSKQKIFQWAQ
QAIEKTEQLWQRAQITHVEKFHKVVDTWSEASETLKQEVVRYYEHTDPLNPVYMMAFSGA
RGNLSQVRQLVGMRGLMADPHGQLIDLPILSNFREGLTVTEYLISSYGARKGLVDTSLRT
ADSGYLTRRLVDVAQDVIIRQADCGTLRGIAVPVSKALIGRVLAQDVNEECKRNQLITAD
MLVALRDTKQVIVRSPLTCEALRCICQLCYGGNLAYGHMVDLAEAVGIIAAQSIGEPGTQ
LTMRTFHTGGVFTSAQTASVRATLDGVVTYEGRCKSTRTRYGQEAWLLETSTPLFLQNDG
QQHRYDFQAGTVLLVKSGQRVKFNTLLAYLPTSTRFEKATKSVDAHNAGEVVFDQLKLEQ
NLVKKEGILWILSGQMLHLPAGSELLVSNEQQIKPAQVLAQSYLRSRAKGIVQIHTNQVE
LILDRLSFEVKEPFHFHSGDGQIIAEKFEHQTPTGGQVFHRNGQIWLVPAAIYEVSSQKD
LVDIKHGQFILANQRSICGVKNELSGWVQLVKQNEVIKEIRIRPGIYLPKVKTNQLGFVQ
SHLLLSSYGINAYTRRFCYVENYEQGILISPVYVFAGVSPPKIVAKSRWLSLVMYQTCMF
QHQQWVKSYKKVYLMRCQLQLKVAPQAPLNQVTVHKEKNRREWRLSYFSNIKLQAFQTIK
WLVKNHQRVEADVPLALIQLVSAFNGIVRYHPMLNRLLVVSDQDVITYSIGKPHHFQIGD
VIRIGDQISHGLVAKTSGFVIARDANQIQVRIAQGYFLSRETICYVKDGDLVNEGDHLAS
LVFEQVKTGDIIQGLPRIEEILEARKPKNSCELAQFDGVIQEQSLVSDDGRVQAIKGTLI
VCEGTRVQAGEPLTDGAVNAHEWLQIHFNNAVPYRGMVEAARESFAKLQAKLLHQVQQVY
KSQGVDIADKHIEVILRQMTSKVILDDPGDSDFLPGQLVYLNEIASYKHVIFHPVLLGIT
KAALNTESFISAASFQETTRILAQAAMEGQIDQLRGLKENVIMGRLIPAGTGAKYL
NT seq 5031 nt   +upstreamnt  +downstreamnt
atgtgtgatgcaatccaaattagattagcttctccagaacgcattcgtagttgggctgaa
cgtgttttacctaatgggcaagtggtaggagaagtcactaaaccagagaccattaattat
cgtacccttaaacctgaaatggacggactcttttgtgaaaggatttttggtcctgtaaaa
gactgggaatgccattgtggaaaatataagaaagtacgttataaaggcatcgtttgtgaa
aggtgtggtgtggaagtgacggaatccaaagtcagacgtcatcgcatgggctatatagat
ttagctgctgtagtttcccacgtttggtatttaaaaggtcctccgagctatttagccttg
tttttaaatatgtcttcatcagaagtagaacaagtgatttacttccattcttatgtggtc
ttacaatctaccacggaattggttcaaccaaaacaattattatctgaagatgaactcatt
attttagaagaacgtttagctaatcaaccttttcaagtaggaattggcgctcaagctatc
caatatttattacagcaactagatttagacatggaaatacgtgtgttaagaaatcaatta
ttccatgctaaatcgtcaaaaagagaaaaactcatgaaaaggttgcgaattttagataat
tttgccagtacaggcgccgacccaagttggatgattttgagtgtcttaccagttatccca
cctgatttaagaccaatggtgcaattagacggtggacgatttgctacttctgatctaaat
gatttataccgacgagtgatcaatcgtaataatcgtttgaaacgtctacaagagattttg
gcaccggagatcattattcgtaatgaaaaacgcatgttacaagaggcggtagacgcactg
atggataatggtcgaagaggtcgcagcgtagtaggagctaataatcgtgctttaaaatct
ttatctcacatcttagaaggtaaacaaggacgttttagacaaaatttactaggtaagcgt
gtagattattcgggtcgttctgtcattgtggtaggacctgagttgaaactctatcaatgt
ggtttgccgaaagaaatggctttagaactttttcaaccttttgtgatccaacgtttaatg
gcacaaggcttagctaacaatatgaaagcggccaaaaaaattattcaacgtaaagaagcc
attgtggatcaaattcttcatcaagtagtcaaggcgcatcctgttttactgaaccgtgca
cctactttacatcgattaggtattcaagcctttgatcctatcttggtggatggacgtgcg
attcaattacatcctcttgtatgtgctgcttttaacgctgatttcgatggggatcaaatg
gctgtgcatgtacctttatctgtggaagcgcaagcagaggctcgacttcttatgctttcg
gtgaataattttctttctcctgctacaggggatgccattatcatgccttcacaggatatg
gtcataggttgttattatctcacagccaacaatccagccagtcaagcaaaacaatcgcat
tattttgctgattttgagcatgtgcttatggcttttgaacaaaaacagataaatttacac
acatgggtgtgggttcatgtcaataacaaccttaatatcatacttgaacgtagtgcttta
caagaagattggattcagactcgtggcgaaagtttgttcctgaaaaccacacctggccga
attattttttaccaacaagcagcttaccatgtgggattttataatctcaccattaataag
tcacatttaaaagagcttgtcaaaactgtttataacttaaaaggtatggcttgtgctacc
caattagcagatgatttaaaacaactaggttttcactacgctaccacttgtggtttatcc
ttgggtattgaagacttacgagtagcaccttccaaacaaaaaatttttcaatgggctcaa
caagccatagaaaaaacagagcaactttggcaaagagctcaaattactcatgtagaaaaa
tttcataaagtagttgatacctggtcagaagcttctgagacgttaaaacaagaagtggtg
agatattatgaacatacagatccacttaaccctgtctacatgatggctttttctggtgct
cgtgggaatttatctcaggtacgccaattagtagggatgcgaggcttaatggctgaccca
catggacaattaatcgatttacctattctttctaatttcagagaaggtttaactgttacg
gaatatttaatttcttcttatggagcacgaaaaggactagtagatacttctcttcgtacc
gcggattctggttatcttactcgtcgtttggtggatgtggctcaggatgttattattcgt
caagctgactgtggtactttgagaggtattgcagtgcctgtatcaaaggctttaattgga
cgcgttttagcacaagatgtcaacgaggagtgtaaacgaaatcaactcatcactgccgat
atgttagtggccttacgtgatacaaaacaagtcattgtacgttcgccattaacgtgtgaa
gctcttcgttgtatatgccaactttgttatggtgggaatttggcttatgggcatatggta
gatttagctgaagccgtaggtatcatagcagcacaatcaattggtgaaccgggtactcaa
ttgacaatgcgcactttccatacaggtggtgtctttacttcagctcaaacagcatccgtt
cgagcaactcttgatggtgttgttacttatgaaggtcgatgcaaatcgacacgcacacgt
tatggacaagaagcatggcttttagaaacgtcaacaccattattcttgcaaaatgatggc
caacaacatcgttatgattttcaggctggcacagttttgttagttaagtcaggacaacga
gtcaaattcaatactttattagcctatttgcccacttctacacgctttgaaaaagctacg
aaaagtgttgacgcacataatgccggagaagttgtctttgatcaattaaaattggaacaa
aatttagtcaaaaaagaaggcatcctttggattttgtccggtcaaatgctccatttacca
gcaggaagcgaattattggtatcaaatgaacaacagattaaacctgcacaagttttagct
caatcatatttacgttctcgcgcgaaaggaattgttcaaattcataccaatcaagtggaa
ttaattttggaccgtttaagttttgaagtgaaagagccttttcatttccatagcggtgat
ggtcaaattattgcagaaaaatttgagcaccaaactcctacaggaggtcaagtttttcac
agaaatggtcaaatttggttagtacctgccgctatttatgaagtaagttcacaaaaagat
ttagtagatatcaaacatggtcagttcattttggccaatcaacgtagtatatgtggtgtt
aaaaatgaacttagtggttgggtacagttggtgaaacaaaatgaagttatcaaagaaatt
cgtattagaccaggcatttatttaccaaaggttaaaacgaatcagttaggctttgttcaa
tcacatttactcctatcttcttatggtataaacgcttatacgcgtcgcttttgttatgta
gaaaactatgaacaaggtattttgatttcacctgtctatgtgtttgctggggtttcacca
cctaagattgttgctaaatcacgttggctaagtttagtgatgtatcaaacgtgcatgttt
caacatcaacaatgggtgaaatcatacaaaaaggtgtatctcatgcgatgccaattgcaa
ttaaaagttgctcctcaagcacctcttaatcaagtgacggtacataaagaaaaaaatcga
cgtgaatggcgactatcttatttttctaatataaaattgcaagctttccaaaccattaag
tggttagtcaaaaatcatcaaagagtggaagctgatgttcctttagccttaatccaattg
gtaagcgcctttaacggcatcgtgcgttatcatcctatgttgaataggttgttagttgta
tcggatcaagatgtgataacctattccataggtaaaccacaccatttccaaataggtgat
gtcattcgtattggtgatcagataagccatggtcttgtagcaaaaacgtcaggctttgtc
atagctagggatgcaaatcaaattcaagttcgcatagctcaaggttattttttatctaga
gaaacgatttgttacgtgaaagatggtgatttggtcaatgaaggtgaccatttagcatca
cttgtgtttgaacaagtgaaaacaggggatattatccagggtttacctaggattgaagaa
attctagaagcacgaaaacctaaaaatagttgcgaattagcacaatttgatggcgtcata
caagagcagtcccttgtgagtgatgatggtagagtgcaagcaattaaaggtactttaatc
gtttgtgaaggcactcgtgttcaagcaggcgaacccctaacggatggtgctgttaatgct
catgaatggttacaaattcatttcaataatgcggtgccatataggggaatggttgaagca
gcacgcgaaagttttgccaaattacaagcgaaattacttcatcaagttcaacaagtatat
aaatcacaaggggttgacatagctgataaacatatagaggtcatcttgcgtcaaatgact
tcgaaagtgattttagacgatcctggagacagtgattttttaccaggtcaactggtctat
ttgaatgagatagctagctataagcatgtgatttttcatcctgttttattaggtattaca
aaagctgctttaaatacggagagttttatttcggcagcaagtttccaagaaactacaagg
attttggcgcaagcagctatggagggtcaaattgaccaattacgaggtttaaaagaaaat
gttatcatgggcagattaattccagcaggtacaggagctaaatatttatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (77)   

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