KEGG   Clavibacter michiganensis subsp. michiganensis: CMM_0172
Entry
CMM_0172          CDS       T00529                                 
Name
(GenBank) conserved hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
cmi  Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CMM_0172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmi03019]
    CMM_0172
Messenger RNA biogenesis [BR:cmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CMM_0172
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 DUF1732 ODP DUF3880
Other DBs
NCBI-ProteinID: CAN00193
UniProt: A5CMA8
Position
complement(233252..234946)
AA seq 564 aa
MPPTSHAHALDIAKPGRLPRGGLRVTPLGGLGDVGRNMTLFEYEGELLIVDCGVLFPEES
QPGINVILPDFSTLRGRLDKITGIVLTHGHEDHIGGVPYLLQERPDIPVIGSRLTLAFIS
AKLEEHKIKPVTRQVKEGDRITAGKFDLEFVAVNHSIPDGLAVAIRTGAGMVLHTGDFKM
DQFPMDRRLTDLGAFARLGEEGVDLFLTDSTNAEVPGFTTAEKDLTPAIEKVFRTAPKRI
VVSSFASHVHRIQQVLDSAEQYGRKVSFVGRSMVRNMKIASDLGYLRIPKGLVIDLKALN
KLPDDKVTLICTGSQGEPMAALSRMARREHIIEVGEGDTILLASSLIPGNENAIYGVING
LIRWGADVVHKGNAKVHVSGHASAGELVYCYNLVKPRNVLPVHGEWRHLVANAALAESTG
VKNALVIEDGVSVDLVNGRATISGRVPAPYVFVDGMTIGVATEEALEERRTLAAEGQITV
LGIFDEKEQKLIHPAELITRGFVEHDGWIPEAEAAISTALKNAAAKRHLDGVAAERAMSD
GLQRWLQRRHRRTPVVTVIVVDAD
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgcctcccacgtcccacgcccacgccctcgacatcgccaagcccgggcgcctgccccgc
ggcggcctgcgcgtcacgcccctcggcggcctcggcgacgtcggccgcaacatgacgctg
ttcgagtacgagggcgagctgctcatcgtcgactgcggcgtgctcttccccgaggagagc
cagcccggcatcaatgtgatcctccccgacttcagcaccctgcgcgggcgcctcgacaag
atcacgggcatcgtcctcacgcacggccacgaggaccacatcggcggcgtcccctacctc
ctgcaggagcggcccgacatccccgtcatcggatcccggctcacgctcgcgttcatcagc
gcgaagctcgaggagcacaagatcaagcccgtcacccgccaggtgaaggagggcgaccgc
atcaccgcgggcaagttcgacctcgagttcgtcgccgtgaaccactccatccccgacggc
ctcgccgtcgcgatccgcacgggcgccggcatggtcctgcacacgggcgacttcaagatg
gaccagttccccatggaccgccgcctcaccgacctcggcgccttcgcgcgcctcggcgag
gagggcgtggacctcttcctcaccgactccaccaacgcggaggtccccggcttcacgacc
gccgagaaggacctcacgcccgccatcgagaaggtgttccgcacggcgcccaagcgcatc
gtcgtctccagcttcgcgagccacgtgcaccggatccagcaggtgctcgactccgccgag
cagtacggccgcaaggtctcgttcgttggccgctcgatggtccgcaacatgaagatcgcg
tccgacctcggctacctgcgcatccccaagggcctcgtcatcgacctcaaggcgctgaac
aagctgccggacgacaaggtcacgctcatctgcacgggttcgcagggcgagccgatggcg
gcgctcagccgcatggcgcgccgcgagcacatcatcgaggtgggcgagggcgacacgatc
ctcctcgccagctcgctcatccccggcaacgagaacgccatctacggcgtgatcaacggc
ctgatccgctggggcgccgacgtcgtgcacaagggcaacgcgaaggtgcacgtctccggc
cacgccagcgccggcgagctcgtctactgctacaacctcgtcaagccccgcaacgtgctg
ccggtgcacggcgagtggcgccatctcgtcgccaacgccgcgctcgccgagagcacgggc
gtgaagaacgcgctcgtcatcgaggacggcgtgagcgtcgacctcgtcaacggccgcgcc
acgatctccggccgcgtgcccgcgccctacgtcttcgtcgacggcatgaccatcggcgtc
gcgaccgaggaggcgctcgaggagcgccgcacgctcgccgccgaggggcagatcaccgtg
ctcggcatcttcgacgagaaggagcagaagctcatccacccggccgagctcatcacgcgc
ggcttcgtggagcacgacggctggatcccggaggccgaggccgccatcagcaccgcgctc
aagaacgcggccgccaagcgccacctcgacggcgtcgccgccgagcgcgccatgagcgac
ggcttgcagcgctggctccagcgccgccaccgccgcacgccggtggtcacggtcatcgtg
gtggacgccgactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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