KEGG   Callorhinchus milii (elephant shark): 103177668
Entry
103177668         CDS       T03088                                 
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03020  RNA polymerase
cmk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103177668 (polr2b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    103177668 (polr2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmk03021]
    103177668 (polr2b)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103177668 (polr2b)
Enzymes [BR:cmk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103177668 (polr2b)
Transcription machinery [BR:cmk03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     103177668 (polr2b)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103177668 (polr2b)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 103177668
NCBI-ProteinID: XP_007890135
UniProt: V9K9G7
Position
Unknown
AA seq 1174 aa
MYDPDEEMQYDEEDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQMQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGVRKSAIGQRIVATLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEILQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYSQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPDQLMNTLRKLRRQMDIIVSE
VSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGYFRSVFYRSYKEQESKKGYDQEEVFERPSRETCQGM
RHAIYEKLDEDGLIAPGVRVSGDDVIIGKTVTLPESDDDLESINRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMIS
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtacgacccggacgaagaaatgcaatatgatgaagaagatgatgaaatcaccccagat
ttgtggcaggaggcatgctggattgttatcagctcgtactttgatgagaaaggtctggta
cgacagcagttggattcatttgatgaattcatacagatgtcagtgcagagaattgtggaa
gatgcacctccaatagacctccaagctgaagctcagcacacctctggagaagtggaagaa
ccaccccgttttttattgaagtttgaacagatctacttgtcaaagccaacacattgggaa
agagatggtgcaccatcaccaatgatgccaaatgaagctcgactgcgaaaccttacgtat
tcggctccgctttatgtagatataaccaagactgtaattaaagagggtgaagaacaaatg
caaacgcagcaccaaaagacatttataggaaagattcctattatgcttcgatctacctat
tgtcttctaagtggtctgaccgatcgtgatctctgtgaattgaatgaatgcccactggac
cctggtggctatttcatcatcaatggatcagaaaaggttctgattgcacaggaaaagatg
gcaacaaatacagtgtatgtgtttgcaaagaaagactctaaatatgcatacacaggagag
tgtcgatcatgtctggagaattcttcacgccctacaagtaccatttgggtcagcatgctg
gcaagaggcggacagggtgtgaggaaaagtgcaattggtcaacgaattgtggccaccctg
ccatatatcagacaggaagttcccatcatcattgtgttccgtgccttgggttttgtgtct
gacagagacattctcgagcacattatatatgattttgatgaccctgaaatgatggaaatg
gtgaaaccttcactggacgaagcttttgttatccaggaacagaatgtggcgctgaacttc
attggttcaagaggcgcaaaacctggtgtaacaaaagaaaagagaattaaatatgcaaag
gaaattctgcagaaggaggtgctgccacacgttggtgtcagtgacttttgtgagacgaag
aaagcttatttcttggggtatatggtccacagattgctgttagcggcgcttggacgaaga
gaactggatgacagggatcattatggtaacaaaagattggatctggctggaccactgctt
gcttttctgtttagaggaatgtttaagaatctgctgaaggaagtacggatctactcccaa
aagttcatagatcgagggaaagactttaacttggaattagcaattaaaacacggatcatt
tctgatggacttaaatattcattagctacaggaaactggggtgatcaaaaaaaggctcat
caagccagagctggtgtatcccaggtgttgaatcgattgacctttgcttcaaccctttct
catcttcgtcgacttaactctcctattggaagagatggcaaactagcgaaaccccgacag
ttgcacaataccttgtggggtatgatttgccctgctgagaccccagagggtcatgctgta
ggactagtgaagaatctggcattgatggcctatatttctgtaggatctcagccctcaccc
atcttggaattcttggaagagtggagtatggaaaatcttgaagaaatctctcctgctgct
attgctgatgctacaaagatttttgtcaatggttgttgggtgggaattcataaagatcca
gaccagctgatgaacacactgagaaagcttaggcgtcagatggacatcattgtatcagag
gtgtccatggtaagagacatccgagagcgtgaaattcgaatctatacggatgctggccga
atttgtcgtccgcttttgattgttgaaaagcagaaactgttgctaaagaaaagacacatt
gaccaattgaaagaacgagaatataacaactatagttggcaggatcttgtagctagtggt
gtggtggagtacattgatacattggaagaggagactgtgatgctcgccatgacacctgat
gacctgcaagaaaagggagttgcttattgttccacatattcccattgtgagattcaccct
tctatgattcttggtgtttgtgcatcaattattccattccctgaccacaatcagtctcct
agaaacacataccagtctgctatgggtaaacaagccatgggagtttatattacaaacttt
catgttcgtatggataccctagcacatgtgttgtactacccacaaaagcctcttgttacc
acacgctcaatggaatacctgcgattcagagagttgccagcaggtataaactccatagta
gcaattgcttcatatactggttacaatcaagaggattctgtcattatgaaccgttctgca
gtggatagaggctatttcaggtctgtgttctaccgttcatacaaagagcaagaatccaag
aagggatatgaccaggaagaagtttttgagagaccatcacgggaaacgtgccagggaatg
agacatgctatatatgaaaagcttgatgaagatggtttaatagcaccgggtgtacgtgtg
tcaggagacgatgtaatcattggtaaaacagtgacactcccagaaagtgatgatgacctg
gagagcataaacagacgctacaccaagcgagactgcagcacatttctgagaaccagtgag
actggcattgtggatcaggtcatggtgacactaaaccaagagggatacaagttttgcaaa
attagggttcgctctgtccgaattccccagatcggggataaatttgccagtcgacatggg
cagaagggtacatgtggtattcagtacagacaagaggatatgccatttacatgtgaaggt
attactccggatatcatcatcaatccacatgccattccttctcgaatgacaatcggtcac
ttgattgaatgtctccaagggaaggtgtcggcaaataagggtgaaattggcgatgccacc
ccattcaacgatgcagtcaatgtacagaagatttctaatttattgtctgaatacggatac
catctgcggggcaacgaggtattatacaatggatttacaggtcgtaaactcacatcccag
atctttattggtcccacgtactaccagcgtctcaagcacatggtagatgacaaaattcat
tctcgtgctcgaggacctgttcagatccttaacaggcagcctatggaaggaagatctcgt
gatggtggtttacgttttggtgagatggaaagagactgtcagattgctcatggtgcagcc
cagtttttgagagagaggttgtttgaggtttctgatccttaccaagtgcacgtgtgtaat
ctttgtgggctaatggctattgctaacaccaggacacatacctatgaatgcagaggatgt
cgaaacaaaactcagatttcattagttcggatgccttatgcctgtaagcttctcttccaa
gagttgatgtcgatgagcattgcaccacggatgatgatttcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (57)   

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