KEGG   Callorhinchus milii (elephant shark): 103180641
Entry
103180641         CDS       T03088                                 
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
  KO
K20131  Rab5 GDP/GTP exchange factor
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    103180641 (rabgef1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cmk04131]
    103180641 (rabgef1)
Membrane trafficking [BR:cmk04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    103180641 (rabgef1)
 Protein recycling
   Other Rab GTPase associated proteins
    103180641 (rabgef1)
SSDB
Motif
Pfam: VPS9 DUF5601 zf-A20 Cauli_AT Syntaxin Raptor_N
Other DBs
NCBI-GeneID: 103180641
NCBI-ProteinID: XP_042194611
Position
Unknown
AA seq 486 aa
MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYSKARQQQIQGDREFAER
LQREEEAAYASSQGAPSLTFSKFEEKKTNETKRKVQTVKKFFSPSSRGAQKKGEGQEVKA
PSPSISRQASLETDRVSKDFIDFLKPFRRAGHEILKQCRAFIESMNNKKEMNIEEQSEYV
QDFYQNIVDRLQTQSTFKGSSERIENVMDQIEKYIMTRLYKHVFCPETTDDEKKDLAIQK
RIRALHWVTPEMLCVPVNEDIPEVNDLVVKAITDVIEVDSKRVPREKLGCVTQCSKHIFN
AIKITKNEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLC
CAVAFIEKLDAQSLNLTEEDFDRYMSGQSSPKKQDSDTSPGFSQMYKNLSLISQLNEKQE
QIMSGTKKLEKDLIDWSEGVSKDVQDIIEKYPLDIKPRSQPVAAIDSDNVENDKLPPPIE
PQVFAS
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgagcttgaaatcggaacgcagaggaatccatgtagaccagtcggagctgctgtgtaag
aagggatgtggttactatggaaatcctgcttggcaaggcttttgttccaagtgctggaga
gaggagtacagcaaagccagacagcagcagattcagggagaccgggagttcgctgaacga
ctacaacgggaggaggaagctgcttatgcaagtagccaaggagcaccatccctgactttt
tctaagtttgaggagaagaagacgaatgagacgaaaaggaaagtccaaaccgtcaagaaa
ttctttagtccatcatctcgaggtgcacagaaaaaaggagaaggccaggaggtcaaagct
ccaagtccgtccataagcaggcaagccagcctagaaacagaccgcgtttctaaggacttt
attgatttcctcaaacccttccgcagggctggccatgaaatcctgaaacagtgcagagca
ttcattgagtccatgaataataaaaaggaaatgaatattgaggagcagtctgagtatgtg
caggacttctatcagaatatagtggatcgtctgcagactcaatccacgtttaaaggttcc
tctgaacgtatagagaatgtaatggatcagattgaaaaatacatcatgacccggctgtac
aaacatgtgttttgtcccgaaactactgatgatgagaagaaagatcttgcaatccagaaa
agaattagggcattacactgggtgactccggaaatgctttgtgtcccagtgaatgaagac
atccctgaagttaatgacttggttgtaaaggcaattacagatgtcatagaagtggactcc
aaacgggttccacgtgaaaagctgggttgcgttacccagtgtagcaagcatatcttcaat
gccatcaagatcaccaagaacgaacctgcttccgctgatgacttcttgcccacacttatc
tacattgttttaaaggcaaacccgcctcgtttacagtcaaacattcagtacataactcgg
ttctgcaatccgagcaggctcatgactggggaagatggatattacttcactaatttatgc
tgtgcagttgcctttattgaaaaactggatgctcagtctctgaacctgactgaggaagat
tttgatcgctacatgtctggccagtcatcccccaagaagcaggactctgacacgtccccg
ggattctcgcaaatgtacaaaaacttaagccttatttcacagctgaacgaaaaacaggaa
caaattatgtcaggtaccaagaagctggaaaaagacctcatcgattggagcgaaggtgta
agcaaagatgtccaagatattatcgagaagtatccactcgatatcaaaccacgaagccag
ccagtggctgccatcgattctgacaatgtagaaaatgataagcttccaccgcctattgag
ccacaagtctttgctagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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