KEGG   Callorhinchus milii (elephant shark): 103184447
Entry
103184447         CDS       T03088                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
cmk  Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cmk04121]
    103184447 (hltf)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103184447 (hltf)
Enzymes [BR:cmk01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103184447 (hltf)
Ubiquitin system [BR:cmk04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103184447 (hltf)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    103184447 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX zf-RING_2 zf-RING_5 DEAD zf-C3HC4_4 zf-RING_4 Prok-RING_4 zf-rbx1 zf-Nse zf-ANAPC11 zf-RING_6
Other DBs
NCBI-GeneID: 103184447
NCBI-ProteinID: XP_007900635
UniProt: A0A4W3I5F1
Position
Unknown
AA seq 1015 aa
MAFWQNWYNAQGGAGAASAHFPDGSFLFAPDQEESLAQFIDSALADSSALAEEALDSAVL
LGNLRGNVVGLRYYTGVVSKNEMVALQREPRNAHDSNAIRVNNINGDQVGHLRRQLAAAL
AFILDNKLARIEGLVPYKVNNKFTMPVQLSFWAPEAQRAAVLSHLQQHGLNLAPPTQDGG
GAGVWRARAGPSYRAPSHQPVHMTAEQLKSEFDKIFEDIKEDNKTAEMEPAPAVRTALLP
HQKQALAWMVTRENNWELPPFWELRGGLYHNLLTNFTQSQRPDSVHGGILADDMGLGKTL
STIALILSNFHGGRPLPVERSTEEGAEVVDKAPETCSVGDWNMRAGEDLPASARAGAHRD
KDLGMTVAGSRPLAVCEAASSSLKSVKPEPAPSTHRSCSARSEWQVTAGKRAPEEMKSGW
NKRKKVKSTGSSCKGTGASITALPPTHLGEDTAFAAALGGFPSVSKTQPQKVSGGAQALP
EPPARPTLIVCPLSVLSTWMEQFEQHMDPGVQLRRCLYYGQNRPRDPDFLSQQHVVLTTY
TTLTTEHGGEGVSPLQAVLWLRVVLDEGHTIRNPNTRQTRAALALKAQRRWLLTGTPIQN
SLQDLWSLVSFLKLKPFTERQWWHRTIQRPVSLGDEQGLRRLQGLLRNITLRRTKNSQVR
GRPVVTLPRRTLCLQHISLCEEERQIYQAIMDEGRSTISRYLREDSMMTHYAHVFAILVR
LRQLCCHPHLTARTPPAGATTAADGTPEELRAKLVRKMKMVLSCGVDEECAICLDSLRLP
VITHCAHVFCRLCICQVIQQTNARCPMCRAEVRAGQLVECSPGETDSTPAESTRPAWVSS
SKVDALMLSLIEIRRQDPNIKSLVVSQFTAFLSLIEIPLRAEGFSFVRFDGSMSRSRRAK
TVSSFQSCSPASPTILLLSLRAGGEGLTLTAASRVFLMDPAWNPAAEDQCFDRCHRLGQT
RDVIITKFIVKDSVEENMIKIQHRKRDLAIGAFAAKSHSEVTKARVDEIRTLIDL
NT seq 3048 nt   +upstreamnt  +downstreamnt
atggctttctggcagaattggtacaatgcccagggtggggctggggcagcctctgcccac
tttcctgatggaagcttcctgtttgctcctgaccaggaagagtcactggcccagttcata
gactcggctctggcagatagctccgctctggcagaggaagctctggattcggctgttttg
cttgggaacttgcgagggaatgtggtcggattgagatactacaccggggtggtcagcaag
aatgagatggtggctctgcagcgagaacccagaaacgcacatgactccaacgcaatccgc
gtgaacaacataaacggggaccaggtcgggcacctcaggcggcagctggcagctgccctg
gcattcatcctggacaacaagctggcgaggatcgagggcttggttccttacaaagttaat
aacaagttcaccatgccagtgcagttgtccttctgggcacccgaggctcagcgagcggca
gtgctaagccacctacagcaacacggcctgaacctggctcctcccacacaagatggtgga
ggtgcaggagtgtggagagcacgagcggggcccagctacagggcccctagccaccagcct
gtacacatgaccgctgagcagctcaagagtgaatttgacaagatttttgaggatataaag
gaagacaacaaaactgcagagatggaaccagctccggctgtgcgcactgctctgctgcct
caccagaagcaggctctggcctggatggtgactcgggagaacaactgggagctgcccccg
ttctgggagctgcggggtggcctctaccacaacctgctcaccaacttcacacagagccag
cggccggacagcgttcacgggggcatcctggccgatgacatgggcttgggaaaaactctc
tcaaccattgccttaatcctgagcaacttccatggcgggcggccactccctgttgagcgg
agcacagaggagggggcggaggttgttgacaaggctcctgagacatgtagcgttggcgat
tggaacatgagagctggcgaggacctgcccgcgagtgccagagccggtgctcatcgggac
aaggatttggggatgaccgtagctggaagcagacctttggcagtgtgtgaagctgcctcg
tccagtctgaaaagcgtaaaacctgagccagctccgtctacccacaggagctgctccgcg
aggagcgagtggcaggtcactgcaggcaagcgagctccagaagaaatgaaaagtggctgg
aataagaggaagaaagtgaaatccacaggcagctcatgcaaaggcacaggagcgagcatc
acagccctgcccccaacccacctgggggaggacacagcgtttgccgctgcgcttgggggg
ttcccgtccgtctccaagacacaaccccaaaaagtgagcggtggtgctcaggcgctcccc
gagcccccagccaggccaaccctcatcgtgtgcccgctctccgtgctctctacctggatg
gagcagtttgagcagcatatggatcccggcgtgcagctccgcaggtgcctgtattacggc
caaaatcgcccccgggaccctgatttcctgagccagcagcacgtggtgctgaccacctac
accacgctgaccacggagcacgggggagagggagtaagcccactgcaggctgtgctctgg
ctgcgagtggtgctggacgagggacacacaatccgcaaccccaacacccggcagacaaga
gccgcacttgctctgaaagcccagcggcgctggctccttacaggaactcccatccaaaat
tccctgcaggatctctggtctcttgtctccttcctgaagctgaagccgtttactgagcgg
caatggtggcatcgcacaatccaacggccggtctcactgggcgacgaacaaggtctccgg
cggttgcaggggttgctgaggaacataacgctgaggaggaccaagaacagccaggtgaga
gggcggccggtggtgacgttacctcgtcgcaccctctgcctccagcacatctccctgtgt
gaggaggagaggcagatttatcaagccatcatggacgaaggcaggagcaccataagcagg
tacttgcgtgaagactcgatgatgacacactacgcgcacgtgttcgccatcctggtcagg
ctgcgacagctgtgctgtcaccctcacctcactgccaggactcctccagccggggctacc
acagcagctgacggaaccccagaggaactgcgggcgaagctggtgaggaagatgaagatg
gtgctgagttgtggtgtagacgaggagtgtgccatctgcctggactcgctgcggctgcca
gtcatcacgcactgcgcacatgtcttctgccgactctgcatctgtcaggttattcagcag
acgaacgcccggtgccccatgtgtagggctgaggtgcgggcggggcagctggtggagtgt
tctccgggggagacggactcaacgccggcggagagcaccaggccagcctgggtctccagc
tcaaaggtggacgccctgatgctctctctgattgagattcggagacaggatcccaacatc
aagagtttagtggtgtctcagttcacagccttcctctcgctcatcgagatccctctgcga
gctgaaggcttctcgttcgtgcggtttgacggctccatgtcccggagcagacgagcgaag
actgtgagctccttccagagctgctccccggcctccccaaccatcctcctcctctccttg
cgagccgggggtgagggcctcaccctgactgcagcctcccgtgtcttcctcatggatccc
gcctggaatcccgcagctgaagatcagtgtttcgacagatgccatcgactaggccagaca
cgagacgtgatcatcaccaagttcatcgtgaaggactcagtggaggagaacatgattaag
atccagcacaggaaacgggacctggccatcggggcctttgcagccaaaagccacagtgag
gtgaccaaggctcgtgtggatgagatccgaactctcatcgacctgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (17)   
   Pfam (17)   
All databases (94)   

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