KEGG   Cucumis melo (muskmelon): 103489349
Entry
103489349         CDS       T03195                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103489349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103489349
Enzymes [BR:cmo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103489349
Messenger RNA biogenesis [BR:cmo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103489349
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N nSTAND3 AAA_22 ATPase AAA_16 T2SSE AAA_19 PhoH AAA_23 ABC_tran
Other DBs
NCBI-GeneID: 103489349
NCBI-ProteinID: XP_008446709
UniProt: A0A1S3BFR0
Position
10:1322213..1331827
AA seq 1143 aa
MHNFKRLPNFLLVLSKNISCDLSSNHGLAVRPLKLLLQQSRSYSVSRVWRCSYHYAAEQF
SDDEYECDGENNTASSSVANIDEWKWKLSLLSRNEKDQEIVSRDNRDRRDFEQISNLAKK
MGLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHCDRIRLSS
GKASEIPNDAKSIEEDKDVNMDEFEDSYLDGSVMEKVLQRRSLRMRNMQRAWQESPEGRK
MLDFRRSLPAFKEKEKLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSI
ICTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD
RNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAP
TIHIPGFTFPVRSYFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITSL
VENALDKCTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDI
SSLRDQLRAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPAQNIRKVVLATNMAEASITI
NDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVF
TAFSEYQLPELLRTPLNSLCLQIKSLQVPSVGEFLSSALQPPKPLAVQNAIDFLKMIGAF
DEKENLTNLGKFLSMLPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDL
AGIAKGRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSMQTLQAIDSLRRQFS
FILKDAGLVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLL
YANSVNARFNTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVNRGVQAGHLKML
NGYVEFFMDSSLADCYLQLKEELDKLIENKLENPGLDILKEGKYLVLSVQELVSGDQCEG
RFVFGRNSKKQAVSKDDRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEF
KGMQFVGKPKKNKQLAERDAAIEALAWLTQTSDNNANSDDDSPIDVTDNMLKLLGKRRRS
KRR
NT seq 3432 nt   +upstreamnt  +downstreamnt
atgcataatttcaaacgacttccaaattttctcttagtattatcgaagaacatcagctgc
gacctgtccagcaatcacggccttgccgtgaggccacttaaactgcttctgcagcagtct
cgttcctattctgtttcacgagtctggcgatgttcgtatcactacgcggcggagcaattc
tcggacgatgagtacgagtgcgatggtgagaacaatacggcctcgtcctctgtggccaac
attgacgagtggaaatggaaactgagcttgctatctcgaaatgaaaaggatcaagagatt
gtatccagagacaacagagacaggagagattttgagcagatctcaaaccttgccaaaaag
atggggctctactgttcaatgtacggaaaagtggtagttgcaagcaaagttccccttcct
aactaccggcctgatttggacgataaacgaccacaaagggaggttgttattcctttaagt
ttgcaaaggagggtggaaggtttactacaggaacattgtgatcgcattcggttaagttct
ggaaaggctagtgagattccaaatgatgccaagtccatcgaagaggataaagatgtgaat
atggatgaatttgaagattcttatcttgatgggtctgtgatggaaaaggtacttcaacgg
aggagtttgcggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaag
atgctggatttcaggaggtctctgccagcattcaaagagaaggaaaaattactccaggca
atagcacaaaatcaggtagtagttatatctggagaaactggatgtggtaagactacgcaa
cttcctcaatacctattagaatcagaaattgaaactggtcgaggagcattctgtagcata
atatgcactcaacctcgaaggatctctgctatggctgtttctgaaagagtgtccatagag
cgaggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaaggg
aaaaacacccatctgttgttttgcaccagtggtatattacttcggaggcttctaagtgat
cgtaatctaaatggggttacccatgtctttgtggatgaaattcacgagcgaggcatgaat
gaagattttctgttgattgtcttgaaggatctccttccacgtcgccgggatttaagatta
atcttgatgagtgccactttaaacgctgaacttttttccagttattttggaggagcacca
actattcacatcccaggttttacatttccagtgaggtcatactttctggaagatgtgtta
gaaatgactggttacaagttgacatctttcaatcaaattgatgattatggccaagagaaa
atgtggaaaactcaaaaacaacttgctccacgaaaaaggaaaaatcaaatcacttctctt
gtggagaacgctcttgataaatgcaccttgggaaattacagttccaacacgcgagattct
ctctcgtcctggatgcctgactgcataggttttaatcttatcgaggctgttttgtgccac
atatgtcgtaaagaacgacctggtgcagttttagtattcctgactggatgggaggatatt
agcagtttgagggaccaactgagagctcatccacttctaggagatccaaacagggttttg
cttttgacatgccatggttcaatggcaacatccgaacagagactcatatttgagaaacct
gctcagaatatccgtaaagtagttctcgccactaatatggcagaggcaagcatcacaata
aatgatgttgtttttgttattgactgtggaaaagcaaaagaaaccacgtatgatgcatta
aataatacaccttgtctgttaccttcatggatatcacaggcatctgcccggcaaagaagg
ggtcgtgcaggccgtgttcaaccaggaaaatgttatcatctttacccaaaatgtgttttt
acagcattttctgagtaccaacttcctgaacttttgagaactccattaaattccctctgc
cttcaaataaaaagtttgcaggttccaagtgtaggggaattcttgtcatctgctctacaa
ccaccaaaacccttggctgtacaaaatgccattgattttttaaagatgatcggggcattt
gatgagaaggaaaacttgacaaacctcggaaaatttttgtcaatgctccccgttgaccct
aagctaggaaaaatgctgattatgggtgctatctttcattgctttgatcctatccttact
atagtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaaagactta
gccgggatagcgaagggtagattttctgcgaaggactacagtgatcatatggcgcttgtt
cgtgcttatgagggatggaaagatgcagaaagagaagggtcttcgtatgagtactgctgg
aggaatttcctctctatgcaaacacttcaagcaatcgattcacttagaagacagtttagc
ttcattttaaaggatgcaggattagttgatttagatggcagcacaagtaataagttaagc
cacaaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatct
gttgtgcacagagagacatccatgtccttcaaaaccatggatgatggccaggtcctgctg
tatgcgaattctgtaaatgcgcgtttcaatacaattcccttcccatggctggtctttggc
gagaaagtgaaggtcaatacagttttcttacgtgattctactggcatatctgattcgatg
ctgattctttttggtggagcagtaaatcgtggtgtacaggctggtcatttgaaaatgtta
aatggctacgttgaattctttatggattctagtttggcggactgctatttgcaactcaag
gaagaacttgataagcttattgaaaacaaacttgagaaccccggacttgatattctcaag
gaaggaaagtaccttgttctttctgttcaagagttggtgtcgggcgaccaatgcgaaggg
agatttgtgtttggtcgaaacagtaagaagcaagcagtgtctaaggacgacagattcaca
aaggatggtaccaacccaaagagcttgctacaaaccttgctaatgagggcaggacattcc
cctccaaagtacaaaacgaagcacctcaagacaaatgagtttagggcactagtagagttt
aagggcatgcaatttgtgggtaagcctaagaaaaacaagcagcttgccgagagggatgct
gctatagaggctctggcctggttgacacaaacctctgacaacaatgcgaattcagacgac
gactctcctattgatgtcaccgacaacatgctaaaacttcttggaaaacgaaggcggtct
aaacgtcgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system