KEGG   Cucumis melo (muskmelon): 103494929
Entry
103494929         CDS       T03195                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03018  RNA degradation
cmo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103494929
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103494929
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmo03019]
    103494929
   03041 Spliceosome [BR:cmo03041]
    103494929
Messenger RNA biogenesis [BR:cmo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103494929
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103494929
Spliceosome [BR:cmo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103494929
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 103494929
NCBI-ProteinID: XP_008454536
UniProt: A0A1S3BYD6
Position
4:10633053..10639683
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
GAKAASGGRGKGGPGGKPGANRVGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcctctttccctccttaagactgctcaaggacaccccatgttggtggaattaaaa
aatggtgagacttacaacggccatttggttaattgtgacacatggatgaacatccatctt
cgggaagtcatctgcacttctaaagacggtgatcggttttggcgaatgcccgaatgttat
attcgtggtaatacaatcaagtatttgcgagttccagatgaggttattgacaaagttcag
gaagaaaccaaaagccgtgcagatagaaaacctctgggtgtagggcgtggaagaggaaga
gggcgtgaggatggtcctggtggcagaccagctaaaggaatggggagaggctttgatgat
ggtgcgaaagctgcttctggcggccgtggaaagggtggccctggtgggaaacccggtgcg
aacagagttggaggcaggggacgaggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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