KEGG   Cucurbita moschata (crookneck pumpkin): 111433536
Entry
111433536         CDS       T05248                                 
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    111433536
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111433536
   04121 Ubiquitin system [BR:cmos04121]
    111433536
   03036 Chromosome and associated proteins [BR:cmos03036]
    111433536
   03400 DNA repair and recombination proteins [BR:cmos03400]
    111433536
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     111433536
Ubiquitin system [BR:cmos04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    111433536
Chromosome and associated proteins [BR:cmos03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     111433536
DNA repair and recombination proteins [BR:cmos03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     111433536
SSDB
Motif
Pfam: BRCT zf-HC5HC2H zf-C3HC4_2 BRCT_2 zf-RING_2 zf-C3HC4 zf-RING_UBOX zf-HC5HC2H_2 zf-C3HC4_3 zf-RING_6 zf-C3HC4_4 zf-RING_5 zf-RING_10 RTT107_BRCT_5 zf-rbx1 DUF3638 PTCB-BRCT
Other DBs
NCBI-GeneID: 111433536
NCBI-ProteinID: XP_022926367
UniProt: A0A6J1EEB5
Position
Unknown
AA seq 1108 aa
MGDFSHLEKMGRELKCPICLSLLNSAASLGCNHVFCYVCIEKSMKSASNCPVCKVPFRRR
EVRPAPHMDNLVNIYKSMEAASGMNIFISQNLSSAKLSDGENQVEGDGKGSKRHNAETSE
FIAYEQRTLEKEPQRTRKSKRKNSACSPVKPSFPRKKRVQVPQCPLSETPTRSAKLVHSF
NKENEEPRKSAVASENKGQPVLSPFFWLRERDEDEKSNQQSDMDQPTDSMTMNVLSFSDV
KDSLDESPSKPSMEEVCDKPSYDLDLFDSEMFEWTQRACSPELCLSPFKLQVEDIARTEI
ALLAAAPNEEPRVQNLNGRSNHSGGIPDELVVADVSLLEDNSTKDHTGSAKLSKRGRKRK
ETALRKCAKRLGESAIDNYSHSGMETECLLQKQEHHVSNSSDNLKNVTKRSKRKMHRGID
ANKMTLENVPDDPINLATPNENFGTETSGFPEVEKVSQFPEKSHKNGRACKKTHFGRDAK
QATPENAIADPVSLGAPDDEHENFGTELLALPEVEKVCQLPENSRMKGRGRKKAHFGNDA
NMTILEDVPAHPIGLGTPNDGSRNFGTELSAFQEIEKVSQFPEKNNKNGEAGKDQRLVQY
RRKSKKQKLYSGDDKLREKQSFNQNQQDGCAIPDLTTTPGIATSTDKKREHEKQDKSSSA
CITTSEYDNVTQEKPVAQENRIELSEIFPCCTDTKILDPMAKKVGSGKHERLDNEFHCAF
CLSSEESEASGRMVHYFNGKPIATDDVKNSKVVHAHWNCVEWAPNVYFDGDTAINLEAEL
SRSRRIKCGFCGNKGAALGCYEKCCRKSFHVPCAKLMPQCQWDTENFVMLCPLHPDSKLP
SQYLGHQERKRSCAPKRQSNTKCIAVAREISNSRGFTFRESSKKLVLCCSALTTAEREAV
TEFQRLSGVPVLQKWDDSVTHIIASTDENEACKRTFKILMGILKGKWVLSLKWIRACIQA
MEQIEEERFEITLDVQGIRDGPQLGRLRVLNNQAKLFSGFKFFFTADFLPSYKGYLQQLV
TAAGGTILLRKPVSSNQNTPCSSPNCQVFIIYSLEIPDQCDPGERSKILNYRRSDAESLA
KSAAAKVATNLWLLNSIAGSKLSSRLVE
NT seq 3327 nt   +upstreamnt  +downstreamnt
atgggggatttcagtcacctggagaagatgggaagagagctcaaatgcccaatttgtttg
agccttttaaactctgccgcttcactgggatgcaaccacgtattctgctatgtatgtata
gagaagtcaatgaaatcggcttcaaactgcccagtttgtaaggtgccttttcggcgtaga
gaagttcgtcctgctccacacatggataatttggtgaacatttacaaaagcatggaagct
gcttcgggaatgaatatatttatttctcagaatttgtcttctgctaagttatctgatgga
gagaatcaagtggaaggtgatggcaaaggttcaaaacggcataatgcagaaaccagcgag
ttcatagcttatgaacaaagaactttggaaaaagagccacaaaggacacgaaaatccaag
cggaagaattctgcttgttcccctgtgaaaccttcatttccaagaaagaaaagggttcag
gtgccgcagtgtcccctttcagaaacacctacccgatctgcaaagttagtacatagtttt
aacaaggagaatgaagaaccgagaaaaagtgcagttgcttcggagaataaaggtcagcca
gtgctttcgccttttttttggttgagagaaagagatgaagatgaaaagtcaaatcagcag
tctgatatggatcagcctacggactcaatgacaatgaacgttctttccttcagtgatgtt
aaggattcactggatgaaagcccttcaaagccttcaatggaggaagtgtgcgacaagcca
tcctacgacttggatctttttgatagtgaaatgtttgaatggactcaaagagcatgttcc
cccgaactttgtttaagtccctttaaactgcaggttgaagatattgccagaactgaaata
gcattattagcagcagcacctaatgaagaacctagggttcaaaatctaaatggaaggtct
aatcacagtggtggtataccggacgagttggtggtagctgatgtgtcccttctagaagac
aacagtacgaaggatcatactggaagtgctaaactcagcaaaagaggtagaaagagaaag
gaaactgcactgaggaaatgtgctaaaagattgggagaatcagccattgacaattattcc
cattcaggtatggaaaccgaatgcttgcttcaaaagcaggaacaccatgttagtaacagc
tctgataatctgaaaaatgttaccaaaaggagcaagaggaaaatgcaccgtggtattgat
gcaaataagatgactcttgaaaatgttcctgacgatccaattaatttagccactccaaat
gagaattttggaaccgagacatcaggcttcccagaagtggaaaaggttagtcaattcccg
gaaaagagtcacaagaacggcagagcctgcaagaaaacgcacttcggtagggatgccaaa
caggcgactccagagaatgctattgccgatccagtcagtttaggagctccagatgatgaa
cacgagaattttggaaccgagctgttagctttaccagaggtcgaaaaggtttgtcaatta
cctgaaaatagtcgcatgaaaggcagaggcaggaagaaagcacactttggtaacgatgca
aatatgacgattcttgaagacgttcctgcacatcccattggtttaggaactccaaacgat
ggttctcggaattttggaactgagctatcagcttttcaagaaatcgaaaaggttagtcaa
ttcccagaaaaaaataacaagaatggtgaagccggcaaagaccagagattggtccaatac
cgcaggaagtctaagaaacaaaagttatattcaggggacgacaaactgcgagagaaacaa
tctttcaatcagaatcaacaagatggttgcgccattcctgatttgaccaccacacccgga
attgctacatctactgataaaaaaagggaacatgagaaacaagataaaagttcctctgct
tgcataacaactagtgagtatgataacgtcactcaagaaaagcctgttgctcaggaaaat
cgaattgagctctctgaaatttttccatgctgtaccgacacaaaaatcctggatcctatg
gccaaaaaagttggttcaggaaaacatgaaagattggataatgaatttcattgtgctttc
tgtctctcatcagaagagtcagaggcttctggaagaatggtccactacttcaatggaaag
ccgattgcaacagatgacgtaaaaaactctaaggtcgtacatgcacactggaattgtgtt
gaatgggcgcccaatgtttactttgatggtgacacagcgattaaccttgaagctgaactc
agtagaagtcgaagaattaaatgtggtttctgcggaaacaagggtgctgctcttgggtgt
tatgagaagtgttgtcgtaagagctttcacgttccttgtgcaaaattgatgccacaatgt
caatgggatactgaaaattttgtgatgttatgcccacttcatccggattctaaactgcca
agccaatatttgggacatcaagaacggaaaagaagttgcgctcctaagcgacaatcgaac
actaaatgtatagcagttgcgcgtgagatcagcaatagtagagggtttacatttcgtgaa
tcatctaagaaattggttctgtgctgttcagctctcaccacagcagagagggaagctgtt
actgaatttcagagattatctggagttccagtgttacaaaaatgggatgatagcgttaca
catattattgcatcaacagatgaaaatgaagcatgtaaaagaaccttcaaaattttgatg
ggcattttgaagggaaaatgggtactgagtctgaaatggattagggcttgtatacaagcc
atggagcaaatagaggaagaacgctttgagataactctagatgtgcagggaatcagagat
ggccctcaacttggaagattgagagtcctgaacaatcaagcaaaacttttttctgggttc
aagttcttctttacagcggatttcttaccttcatacaaaggatatctccaacaacttgtt
actgcagctggaggaactattctgcttagaaaaccagtttcaagcaatcaaaacacccct
tgttcttcacctaattgccaagttttcatcatttacagtcttgagattcctgatcaatgc
gatccaggtgaaaggagtaagattctcaattacagacgttccgatgccgagtcgcttgct
aagtcggctgcagccaaagttgcaaccaatctatggcttttgaactcgattgcaggcagt
aaattgagcagtcgtcttgtggagtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (31)   

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