KEGG   Cucurbita moschata (crookneck pumpkin): 111444859
Entry
111444859         CDS       T05248                                 
Name
(RefSeq) THO complex subunit 2-like isoform X1
  KO
K12879  THO complex subunit 2
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013  Nucleocytoplasmic transport
cmos03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111444859
  09122 Translation
   03013 Nucleocytoplasmic transport
    111444859
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111444859
   03041 Spliceosome [BR:cmos03041]
    111444859
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     111444859
Spliceosome [BR:cmos03041]
 Complex C
  Other components
   EJC/TREX
    111444859
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111444859
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 LIM_bind
Other DBs
NCBI-GeneID: 111444859
NCBI-ProteinID: XP_022938714
UniProt: A0A6J1FEW8
Position
Unknown
AA seq 1891 aa
MALPPVECIYVVESNLREWKSGNSSFRVPQPVPVLRFLYELCWTMVRGELPFPKCKAALD
SVEFSDQMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDAP
NNNFSGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKYHASQILG
FKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIVLDSIYAHLLPKEDEAFEHYDSFSSKRL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFSALDMESEAVNERSPELENNQTLGLLTG
FLSVGDWYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGAYSG
TSIDTIGTTSLPVGGTFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSAIEFV
NSMESGLNPEFGILAGNRAPHLHLKEARLKIEEALGTCLLPSLQLIPANPAVGQGIWEVM
NLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH
ANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGL
NLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYT
ENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLI
AQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASAYAQLIPSLNELAHL
YHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDATVAGNNSDLEPAECSADVVLDLGS
SQKLVRWSDLLDTVKSMLPPKAWNSLSPDLFTTFWGLTLYDLYVPRSRYETEIAKQHSAL
KALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVRRRLSREKDKWLSSC
PDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIK
SDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQNNS
IYPSQNEPGGGKTAAIAIPNSDSLNIGKDHSLRSRSSDVRMDKIDGSSVPKSELEHGKMK
GTSLNGPDSQPLVPSTSVHSGSLRMVESLKPGDDLSRTLDEGSSKVISKTSSESELRVSA
KRSAPAGSLNKAPKQDITKDEIRTGKAASKNPGSSTSERELPNHSIDGGRHGGSSNVPSS
VMPNGNTQGSLTKGSSLSVKALDGHTIESKAESGVGRTSDSRASSAKDDGTEALEVARSS
SSRLAHSPRHDNSTSGSRSSDKLQKRASPAEEPDRQGKRRKGDGETRDVDGDFCISDKDR
SMDPRSVDADKLGTDEQGGYRGSDKPLDRTKDKVNERYDREYRDRVERPEKSRGDDPSVE
RTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYTDSTIEKSHVDDRFHG
QSLPPPPPLPLHMVPQSVNSGRREEDADRRFGTTRHTRRLSPRHEEKERRRSEENLISQD
DAKRRREEEFRERKREERELGMSLKADDRDREREREKANLLKEDMDGSATSKRRKLKREH
LSLAEAGEYSPVGPPPPPISVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVN
KMTRREADLMYDREWDDEKRMRADQKRRHRK
NT seq 5676 nt   +upstreamnt  +downstreamnt
atggctctccctccggttgagtgtatatatgttgtagaaagcaatcttcgagaatggaag
tccggaaattcgagctttagggttcctcaacctgtccctgtgcttcgattcctttacgag
ctctgctggaccatggtccgaggtgaattgccattccccaagtgtaaagcagcattggat
tcagttgagttctcggatcaaatgtctgcggaggagttaggatcaacttttgctgatgtc
attacccaattggcccaagatatcacattagcaggagagtatcgtgctcgtctcttaaaa
ttggctaagtggcttgttgaatcagcatttgtcccattgcggctttttcaggagcggtgt
gaggaagaatttctatgggaggctgaaatgataaagattaaggcgcaagaattaaaaaat
aaagaggtcagagtaaatactcgtcttctatatcagcaaacgaagtttaatcttctgcgg
gaagaaagtgagggttatgccaagttggtaacacttctttgtcgggtcactgacgctcca
aataataatttttcgggatcgacaattgggattataaagtcattgatcgggcattttgat
ctggacccaaaccgtgtttttgacattgtcttggagtgttttgaacttcagccagaaaat
agtgttttcgtggagctaattccaatatttcccaagtatcatgcttcacaaatccttggg
ttcaaatttcaatattatcagcgtattgaagtaaattcgccagtgccatttgggctttat
aagcttacagcgttactagtgaaggaaaaatttattgttcttgatagcatatatgcacat
ctgctcccgaaggaggatgaggcatttgaacattatgattccttttcttccaaaagactt
gatgaggctaacagaataggaaaaataaatcttgcggcaactggaaaggacctgatggat
gacgagaagcaaggagatgtaagcatcgatcttttttctgctcttgatatggaaagtgag
gcagtcaatgaaaggtctccagagctggaaaacaatcaaacattgggcttgcttactgga
tttctttctgtgggtgactggtatcatgcacacatactgtttgatcggctttcacctctc
aatcctgtggagcatcttccaatttgtaacagcttgtttaggctcattgaagaatcaatc
tcctctgcatattctattgtccgtcaaaatccttatcagagcttgggggcatactcagga
actagtattgatactataggcactacaagtttgccggtgggtggtacttttatagatctt
ccaagggaattattccagatgcttgccgctgctggaccttatctctatcgtgatacaatt
ctgctacagaaggtttgtagagtgcttagaggctattatatgtcggcaattgagtttgtc
aacagtatggaaagtggtctgaatcctgaatttggcatcctagctggaaaccgggctcct
catcttcacttaaaggaagcaaggttgaagattgaggaagccttaggaacgtgcctactt
ccttctttacagttgatacctgccaatccagctgttggtcaaggaatatgggaagtaatg
aatcttcttccatatgaggtgcgatatcgtttatatggtgaatgggagaaagatgatgag
aagattccaatggttttggctgcaaggcagacggctaagttggacacacgaaggattttg
aagcggttggctaaagaaaatttgaagcaattgggtaggatggttgcaaaacttgctcat
gcgaatccaatgactgtccttcgtacaatagtacaccagatcgaggcatatagggatatg
attactcctgtagtagatgcattcaagtatctgactcagcttgagtatgacatattggaa
tatgttgtgattgaacgtttggcacaaggagggcgtgataagttgaaggatgacggcctt
aatctctcagattggctccaatcattagcttcattttggggtcacctgtgtaaaaagtac
ccatctatggaactaaggggtttgtttcagtatcttgtcaatcagttaaaaaaaggccaa
ggaattgagcttgttctcctgcaggagcttgttcaacaaatggctaatgtccaatacaca
gaaaacctgactgaggaacagttggatgctatggcaggaagtgagaccctacgttttcag
gcaacttcttttggagttacacgaaataacaaggcgttgatcaagtcgagcaacagactg
cgtgactcgttgcttcctaaggatgaaccaaaattggcggtcccccttttgctacttatt
gctcaacaccgttcagtggttgttataaatgcagatgctccttacataaagatggtcagc
gagcagtttgatagatgtcatggaactctgcttcaatatgtggaatttctttgtagtgca
gttacgccagcatctgcttatgctcagttgattccctcactcaatgaacttgcccatctt
tatcacctagatcccgaggttgctttcctgatatatcggccaataatgagactatttaag
tgtcaaggtggttctgatatcttctggccactggatggtaatgatgcaactgttgctggc
aataattctgatctggaacctgcagaatgttctgctgatgtcgttttggatcttggttct
tcacagaaacttgtgaggtggtcagatctgctcgatactgtaaagtctatgttgcctcca
aaagcttggaatagcttgtctccagatctctttactacattttggggtctcaccctctat
gatctttatgttcctcggagtagatatgaaactgaaattgctaagcagcattctgctctt
aaagctttagaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagac
aaagaaagaattcaagaatctcttgatcgcctgtccaatgaacttgttaagcatgaagaa
aatgttgcatcagttcgtagacgactttctcgtgaaaaggataaatggttgagctcctgt
cctgatactttgaaaattaacatggagttccttcagcgttgtatttttccccgctgtaca
ttcagcatgcctgacgctgtctactgtgctatgtttgtgcacactcttcattcccttgga
acaccatttttcaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaaccc
atgatatgctgctgtacggaatatgaagcaggcaggcttgggaggtttttatatgagaca
ctaaagatagcttatcattggaagagtgatgaatccatttatgaacgtgaatgtggaaat
atgcctggatttgctgtctattataggtatccaaacagccaaagagtaacgtacggccag
ttcatcaaggttcattggaagtggagccaaagaattacacggttattgatacaatgcttg
gaatctacagagtacatggaaattagaaatgctcttataatgttgacaaaaatatccaat
gtgtttcccgtcactagaaagagtgggatcaaccttgagaaacgggttgctaagatcaaa
agcgatgaaagagaagatctgaaggtgttagcgactggcgttgctgcagccttggctgct
agaaagccttcatgggttacggatgaagagtttggcatgggttaccttgaattaaagact
gcaccatctcttgcatcaaagtcttcggccagtaatttagctgctagccaaaataattcc
atttatccttcccaaaatgaacctggtggagggaagactgctgcaatagccatcccaaat
tcagattctttaaatataggaaaagaccattcattgaggtcaagaagttctgatgtgaga
atggataaaatagatggttcttctgttccaaaatctgaactcgagcatgggaaaatgaaa
ggcacgtcattgaacgggccagattcccagccactggtgccctcaacttctgtacattca
ggatcgttaagaatggtggaaagtctgaaacctggtgatgatttaagtaggactttggat
gagggctcatcaaaagttatttcaaagacctcgtctgaatccgagttgagagtttcagcg
aaacgatcagcacctgctggatctcttaataaagcaccaaaacaagatatcacaaaagat
gagattagaacaggaaaagctgctagcaagaaccctgggtcttccacaagtgaaagggag
cttccaaatcattcaatagacggtggtaggcatggaggttcttccaatgtaccttcttca
gttatgccaaacggtaatacacaaggttcgttaactaaaggctcgtccttatcagtaaaa
gctttagatggtcatactattgaatcaaaggcagagagtggggttgggaggacttccgat
agtagggcttcatcagcaaaggatgatggcactgaagctcttgaagttgcaaggtcctct
tcttccagacttgctcattcacccaggcatgataattcgaccagtggttctagatctagt
gataagctgcagaaaagagctagtcctgcagaagaacccgacagacaaggtaaacgccgg
aaaggagatggtgaaactagagatgtagatggggatttttgcatctctgacaaagataga
tctatggatccacgttctgtagatgctgataaactaggaacggatgaacaaggtggttac
agaggttcagacaagcctttggataggacaaaagataaagtaaatgaaaggtatgatagg
gaatacagagaccgggtagagcgccctgaaaagtcccgtggagatgatccatcagtagaa
agaacaagagatagatcaatagaaagatatggaagagaacgctctgttgaaaaagtggag
agagtttctgataggtatcctgaaaagtctaaggatgaaagaaataaagatgataggagc
aaattacgatatactgattcaactatagagaagtctcatgttgatgatcggttccacgga
cagagcttgccacctccgccgcccttgcctctacacatggtccctcaatctgttaatagt
gggagaagagaagaagatgcagataggaggtttggaactactagacacactcgaaggctt
tctcctagacacgaagagaaggaacgaagacgatcagaggaaaatttaatttcacaggat
gatgcaaaacgcagaagagaagaggaatttcgagaaagaaagagagaagagagagagttg
gggatgtcattgaaggcggatgacagggatagggagagggagagggaaaaggcaaacctt
ttgaaggaggacatggacggttctgccacctccaagaggcgaaaacttaaaagggagcat
ctgtcattagctgaggccggtgagtattctcctgttggcccaccacctcctccgataagt
gttggtgcgtctcaatcttatgatggacgagaaagaggagaccggaagggagtaatgatg
cagcgtgccggttacctggatgacccaggcttgagaattcacggtaaagaagtggtcaac
aagatgactagacgtgaagctgatctaatgtacgaccgagaatgggacgatgagaaaaga
atgagagcagatcagaagcggaggcatcggaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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