KEGG   Cucurbita moschata (crookneck pumpkin): 111446001
Entry
111446001         CDS       T05248                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111446001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111446001
   03036 Chromosome and associated proteins [BR:cmos03036]
    111446001
Enzymes [BR:cmos01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     111446001
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111446001
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     111446001
Chromosome and associated proteins [BR:cmos03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    111446001
SSDB
Motif
Pfam: DEAD Helicase_C ResIII TFIIA
Other DBs
NCBI-GeneID: 111446001
NCBI-ProteinID: XP_022940370
UniProt: A0A6J1FQD2
Position
Unknown
AA seq 503 aa
MNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQQYVQRNLVPNQQYQQQQHQNQHQHQHQH
QNQQLQQQQQWLKRNQLGGGPADSNVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYKT
EDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKT
AAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDD
IMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEQLIRFLP
ANRQVLMYSATFPVTVKDFKDRYLHRPYIINLMDELTLKGITQFYAFVEERQKVHCLNTL
FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL
VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR
IEQELGTEIKQIPPHIDQAIYCR
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgaacaatagaggaaggtatcctcctgggatcggtgctggacgaggcggaggcgtgaat
gcgaatccttcgtttcagtcaagaccacatcagcagcaatatgtacaaagaaatttggta
ccgaatcagcagtatcaacaacagcagcaccagaaccagcaccagcaccaacatcaacac
caaaaccagcagcttcaacaacaacaacagtggctgaaaaggaaccagttaggtggcggt
cctgccgattctaacgttgacgaggtggagaagaccgtgcagtcggaggctgttgactcg
agttcacaagattggaaggctaggttaaagattccaccacctgatacacgatataaaaca
gaggatgtgacggctaccaaaggaaatgaatttgaggactattttctaaaacgtgaatta
ctcatgggaatctatgagaaaggctttgaaagaccatctcctattcaagaagaaagtatt
ccgatcgctttaactggtagtgatattcttgcaagagcgaagaacggaactggaaagaca
gctgcattttgcattcccgccttagaaaagattgatcaggataacaatgtaatccaagtt
gttatccttgttccaactcgagagttggctcttcaaacttcacaagtgtgtaaggaactc
gggaagaatttgaatattcaagttatggttacaacaggtggtaccagtttaaaggatgat
atcatgcgactatatcaaccagttcatttgttagttggaactccaggaagaatattagat
cttgcgaaaaagggtgtttgtgtactgaaagattgttctatgcttatcatggatgaggct
gacaagctcttgtctccagagttccaaccctcaatagagcagttgatacgctttttgcct
gcaaatcggcaggttcttatgtattccgctacctttcctgttactgtgaaggacttcaaa
gatagatatcttcacaggccctatattataaacttaatggacgagcttactctaaagggt
atcacccaattctatgcatttgttgaagaaagacaaaaagtgcactgccttaatactctt
ttctctaagctgcaaatcaaccagtcaattatcttctgcaattcggtaaatcgagttgag
ttgttagccaagaaaattacagaacttggttattcttgtttctatattcatgcaaagatg
ctgcaagatcatcgtaacagagtatttcacgacttccgaaatggtgcatgcagaaatctc
gtttgtactgatttatttacaagaggaatagacattcaagcagtaaacgttgttattaac
ttcgatttccccaagaattcagagacgtatctacacagggtgggacgatctggaaggttt
ggacaccttgggttagctgtgaatttaatcacctatgaggatcgttttaatttgtacagg
attgaacaagaacttggaacggaaataaaacaaataccaccccatattgaccaggcaatc
tactgccggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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