KEGG   Clavibacter sepedonicus: CMS0405
Entry
CMS0405           CDS       T00678                                 
Name
(GenBank) DNA glycosylase
  KO
K05522  endonuclease VIII [EC:3.2.2.- 4.2.99.18]
Organism
cms  Clavibacter sepedonicus
Pathway
cms03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CMS0405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cms03400]
    CMS0405
Enzymes [BR:cms01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CMS0405
DNA repair and recombination proteins [BR:cms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CMS0405
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS
Other DBs
NCBI-ProteinID: CAQ00526
UniProt: B0RBX4
Position
complement(439409..440212)
AA seq 267 aa
MPEGDTVWRTATHLHEAIGGQVLTRSDFRVPKYATLDLAGQEVDEVVSVGKHILHRVGDL
TIHSHLKMEGSWHIYQHGTAWRRPAFEARVVLETAERVTVGFSLGVLEVIPRDQEHTVVG
HLGPDILGPDWGDEAAEEIVRRIAAQPDRAIGLALLDQRNAAGIGNVYRAELCFLRGVLP
TRPVREVPDLPAMIALARRTMRANRDRIERTTTGDLRRGRTDWVYGRKGKACLRCGTRIL
QGQLGDPVRPGMGAQDRVTYWCPRCQT
NT seq 804 nt   +upstreamnt  +downstreamnt
gtgcctgagggcgacaccgtctggcgcaccgcgacgcacctgcacgaggccatcggcggc
caggtgctcacgcgcagcgacttccgcgtgccgaagtacgcgacgctcgatctcgcgggc
caggaggtcgacgaggtcgtgagcgtcgggaagcacatcctgcaccgcgtcggcgacctc
acgatccacagccacctgaagatggagggctcctggcacatctaccagcacggcaccgcg
tggcggcggccggcgttcgaggcgcgcgtcgtgctcgagacggcggagcgcgtcacggtg
gggttttcgctgggggtgctggaggtgatcccccgcgaccaggagcacacggtggtgggg
cacctggggcccgacatcctcgggccggactggggcgacgaggcggccgaggagatcgtc
cggcgcatcgccgcgcagccggaccgggccatcgggctggcgctgctcgaccagcggaac
gccgccggcatcggcaacgtctaccgggccgagctctgcttcctccgcggcgtgctgccc
acccggccggtgcgcgaggtgccggacctccccgcgatgatcgcgctcgcccgccgcacc
atgcgcgcgaaccgcgaccgcatcgagcgcaccaccacgggcgacctgcgccgcggccgc
accgactgggtctacggacgcaagggcaaggcgtgcctgcggtgcggcacgcggatcctg
cagggccagctcggcgaccccgtgcgccccggcatgggcgcgcaggaccgggtcacctac
tggtgcccgcgctgccagacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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