KEGG   Cordyceps militaris: CCM_01383
Entry
CCM_01383         CDS       T03108                                 
Name
(RefSeq) DNA polymerase delta catalytic subunit
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
cmt  Cordyceps militaris
Pathway
cmt03030  DNA replication
cmt03410  Base excision repair
cmt03420  Nucleotide excision repair
cmt03430  Mismatch repair
cmt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cmt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CCM_01383
   03410 Base excision repair
    CCM_01383
   03420 Nucleotide excision repair
    CCM_01383
   03430 Mismatch repair
    CCM_01383
   03440 Homologous recombination
    CCM_01383
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmt03032]
    CCM_01383
   03400 DNA repair and recombination proteins [BR:cmt03400]
    CCM_01383
Enzymes [BR:cmt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CCM_01383
DNA replication proteins [BR:cmt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    CCM_01383
DNA repair and recombination proteins [BR:cmt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      CCM_01383
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     CCM_01383
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol divDNApol DNA_pol_B_2 RNase_H_2 DNA_pol_B_exo2
Other DBs
NCBI-GeneID: 18163414
NCBI-ProteinID: XP_006666602
UniProt: G3J4R0
Position
Unknown
AA seq 1108 aa
MATVVLPQKRVLGESKTGRNMPPTTPSSAKKRKTDIFSSSPAVFSSSQKDPRSRLLGSSQ
PKSVFESEVLEKLSQDISERKQNNTEKDQAWDRPALQALDTTKDSICFQSIDAEEGTLNG
GRTTVKLFGVTEQGHSVMLHVTDFRHYLYVPAPTSFQPKDCGAFKVFLEQQLAQHQPAIH
SVVLRLREDMFGFNGNVQNPFLQITVTDPKFINSVRSTIEAGNANWKGMWGSSDSGIMTY
DNIQYVLRFMVDCKIQGMAWVEAPANTYKLIPEHMRQSNCQIEAEINHHDLVAHKPEGDW
AKMAPLRILSFDIECAGRKGIFPEPEHDPVIQIANVVTRYGEKKPFVRNVFCLDTTSSIV
ATQVLEYEKEAKMLSEWQQFLIKVDPDIIIGYNIANFDFPYLINRAKHLKVNGFEYWTRL
PSIPSRVKDTSFSSKQIGNRDTKATNTNGRLQLDLLQLIQRDHQLRSYTLNSVCAQFLGE
QKEDVHHTMITELFNGTPENRRRLAIYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFN
FLLSRGQQIKFVSQLFRKALEQKLVIPNMKGDPSDDQYEGATVIEPTRGYYDVPIATLDF
ASLYPSIMQAHNLCYTTLITRKDRIAQFNLVKDEDYIVTPNGDTFVTTKQRKGLLAQILE
ELLSARKQAKRELAVETDPFKKAVLNGRQLALKISANSVYGLTGATTGKLPCLAIASSTT
SFGRQMIERTKDEVEKKYCIANGYSHDAQVIYGDTDSVMVKFGTKELAEAMKLGEEAAAF
VSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWTKTEKYDKMDTKGLETVRRDNCLLAQT
VIEKVLRMILINRDVQGAQDYVKDMIADLLQNKVDMSKLVITKALTKEDYTAKQAHVELA
ARMKKRDAGSAPSLGDRVAYVMIRGAAGAKNFEKSEDPIYVLENNVPIDTKYYLDNQLAK
PLTRIFEPILGETKARSLLTGDHTRTISVAAPSVGGLMKFAKKTQTCMGCKRPLKGKTES
EGAVCGDCGPRVGELYKRTLDRMSDLEVRFGRLWTQCQRCQGSMHCEVICSSKDCPIFYM
RMKAKKDLEDAGKELSRFDADQAAVWQL
NT seq 3327 nt   +upstreamnt  +downstreamnt
atggcgaccgtggtcctcccccagaagcgggtgctgggtgagtccaagactgggcgaaat
atgccgcccacgacgccctcgtccgccaagaagcgcaagacggacatcttctcgtcttca
ccagctgtattttcgtcgtcgcaaaaggacccgcgctccaggctgctgggctccagccag
cccaagagcgtcttcgagtccgaggtgctcgagaagctcagccaggacatttccgagcgc
aagcagaataatacagaaaaggaccaggcgtgggaccgcccggcgctccaggccctcgac
accacaaaggatagcatatgcttccagtccatcgatgccgaagagggtacgctaaacggg
ggtcgcaccacggtcaagctgtttggcgtcaccgaacagggccattcggtcatgctccac
gtcaccgacttcagacactacctatacgtccccgcgccgacgtcctttcaacccaaggac
tgcggagcgttcaaggtgttcctggagcagcagctcgcgcagcaccaacccgcgatccac
tcggtggtgctgcgtctgcgtgaagacatgtttggcttcaatggcaatgttcagaacccg
ttcctgcagattaccgtcaccgaccccaaatttatcaacagcgtccgatcgacaatcgag
gccggcaacgccaactggaagggcatgtggggcagcagtgacagcggcatcatgacttac
gacaatattcaatacgtcctgcgcttcatggttgactgcaagatacaaggcatggcctgg
gttgaggcgccggcgaacacatataaactcatccctgagcacatgaggcaatccaactgc
caaatcgaggccgaaatcaaccaccacgatctcgtcgcacacaagccggaaggcgactgg
gccaagatggcgccactccgtattctgtcttttgacatcgagtgcgctggccgaaagggc
atcttcccagagcctgaacatgaccccgtcattcagattgccaacgtcgttacccggtat
ggtgaaaagaagccattcgtcagaaacgtcttttgtctcgatacaaccagttccattgtc
gccacccaagtcctcgaatacgagaaggaagccaagatgctgagcgagtggcagcaattt
cttatcaaggtcgatcccgatatcatcattggctacaatattgccaactttgactttcca
tatctcatcaaccgagccaagcacctcaaggtcaacggcttcgagtactggactcgatta
cccagcattccatccagagttaaggataccagcttttccagcaaacagatcggtaaccga
gatacaaaggcgacgaataccaacggccgcctgcagctagatctgcttcaactgattcaa
cgtgatcaccaactgcgtagttatacgctaaactcagtctgcgctcagttcctcggcgaa
cagaaggaagatgtccaccacaccatgattacagagctcttcaacggaacgccggagaat
cgtcgacgtctggcgatttactgtttgaaggatgcatatctaccacaaaggttgatggat
aagctgtcgtgtctggaaaactataccgaaatggctcgtgtcacgggtgttccgttcaac
tttttgctctcgcgtggtcagcaaatcaagtttgtcagtcagcttttccgtaaagccctg
gaacagaaattggtcattcccaacatgaagggcgatccttcggatgatcagtacgaaggt
gcgacagttattgaacccacgcgaggctactatgacgtgccgattgcaacactggatttt
gcctcactgtatcccagtatcatgcaagcacacaacctctgctacacaacgctcattacc
cgaaaagacagaatagcacagttcaatctggtcaaggacgaagactacattgtcactccc
aacggcgacacgtttgtgacgacgaagcagcgaaaggggctgctggcgcaaattctggaa
gaacttttgtcggccagaaagcaggccaagcgtgagctggccgttgaaacagacccgttc
aagaaggctgtgttgaacggtcgtcagctggctctgaagatttctgccaactcggtctac
ggtctcaccggtgctacaaccggaaagctaccatgtttagcgattgctagttcaacaacg
agtttcggtcgccaaatgattgaaaggaccaaggacgaagttgagaagaagtattgcatt
gccaacggatactcgcacgatgcgcaagtaatttatggtgataccgattccgtcatggtc
aagtttggcaccaaagagctggccgaggcgatgaaactgggcgaggaagcggctgcgttt
gtttcgtcgaaatttgtcaagcccatcaagttggaattcgaaaaggtctacttcccgtac
ctgctcatcaacaagaagcgttatgctggtctgtactggaccaagacggaaaagtacgac
aagatggacacaaagggtctggagacggtacgaagagataactgcttgctggcgcaaacg
gttattgaaaaggtgctgcggatgattctcatcaaccgtgacgtgcagggtgctcaggac
tacgtcaaggatatgattgccgaccttttgcaaaacaaggtggacatgtcaaagctagtg
attaccaaagccctgacaaaggaagactacacggccaagcaagcgcacgtggagctagcg
gcacggatgaagaagcgtgacgccggttcggcgccttcgctgggtgaccgtgtggcgtat
gtgatgatccgaggcgcggcgggggccaagaactttgaaaagtcggaagaccccatctac
gtgctcgagaacaacgtgccgattgacacgaagtactacctggacaaccagctggccaag
ccgctgacgcgcatctttgagccgatcctgggggagaccaaggcgcggtcgctgctgacg
ggagaccacacacggacgatttcggtggcggcgccgtcggtgggcgggctgatgaagttt
gccaagaagacgcagacgtgcatgggctgcaagcggccgctcaagggcaagacggagagc
gagggagccgtgtgcggcgactgcgggccgcgggtgggcgagctgtacaagcgcacgctg
gaccgcatgtcggatctcgaggtgcggttcgggcggctgtggacgcagtgccagcgctgc
cagggcagcatgcactgcgaggtgatttgcagcagcaaggactgtccaatcttttacatg
cgcatgaaggccaagaaggatctcgaggacgcgggcaaggagttgtcgaggtttgacgcg
gatcaggctgcagtttggcagctctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (41)   

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