KEGG   Chelonia mydas (green sea turtle): 102942604
Entry
102942604         CDS       T02989                                 
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
  KO
K06237  collagen type IV alpha
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy04510  Focal adhesion
cmy04512  ECM-receptor interaction
cmy04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102942604 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102942604 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102942604 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cmy04147]
    102942604 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:cmy00536]
    102942604 (COL4A6)
Exosome [BR:cmy04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102942604 (COL4A6)
Glycosaminoglycan binding proteins [BR:cmy00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102942604 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102942604
NCBI-ProteinID: XP_007060206
Position
9:83884699..84070637
AA seq 1684 aa
MHTGLVVLVAFCLAVELVTGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGSIGNQGPI
GVPGFAGPEGLAGPKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFR
GLDGCNGSIGSPGVSGLDGFPGTQGPPGRFGPKGPKGEPAYAQGGLKGSKGENGLPGLDG
ISGPKGFPGPAGSVGPIGLPGLQGPPGAMGPPGPKGNMGLGFQGEKGAKGDVGLPGPAGP
PPSTGILEFMGFPKGKPGAKGEPGPKGFPGIGGLPGPMGFGGIGEKGEKGIPGLPGGRGF
LGLDGSDGFPGRKGQFGLPGFPGLDGVQGMKGELGEMGPPGPLISLDREDGLISGLPGDP
GIPGTPGPRGDEGIVGLPGLPGTRGLSALDRGAPGLMGFPGIPGITGEPGDQGRATVGLP
GTPGIGGLPGMPGPPGLPGPAQILNGEPGEPGRPGQRGPPGVLGLKGTKGDPGDCACDGG
VTGAGPKGAPGPLGPPGSPGEPGFKGSSGDPGSVGAQGLRGPPASPGQPGSPGRKGEKGD
PSFARGRGLHGDPGATGARGPSGIPGTPGRDGFPGLPGQPGPPGDVGLGFPGEKGLPGLP
GSKGRRGESGLPGIGFPGPSGVRGPPGDPGMDGFPGQPGLPGPPGITLPCVVPGGFGAPG
PPGIPGRPGPKGRPGFPGIPGQPGLRGSKGQPGIPGSMALPGAPGFPGPRGDQGPQGLPG
LDGTDGFPGKMGTPGLSGAKGAPGEVFGAERGALGERGRPGFPGDKGLVGEPGFPGQKGV
DGRPGLPGFKGERGNPGLRGIDGLRGPPGPGGPFGIKGEPGPRGAVGFSGSPGLRGVKGP
TGDAGPPGPAGMKGFPGLEGFPGPPGDRGFPGSPGPLGRDGRPGFFGAKGEKGPPGLIGF
PGMPGLPGIPGVSGLKGIPGSAGREGNIGYSGPSGLKGDRGDRGLPGLPVLRPPELALAF
KGDKGDRGSAGLRGFPGPRGDKGFPGPRGQPGLPGPRGSPTTDRGLPGDAGFPGLPGPPG
LPGQKGQAGIIGLPGFPGESGSEGISGAPGFPGTVGFPGPKGDPGESLGISGGLGDKGER
GDRGFPGERGKDGPKGEPGYPGSTGLDGPKGVPGDLGQEGPPGLPGIAGLRGNAGLPGSP
GQPGPVGFIGLPGIAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLNGPAGLPGPKG
EEGSPGIGLGAPGLPGQKGSSGDMGPPGTLGLPGLPGPPGISLPSNIPGRRGDPGRPGVD
GNPGPPGPPGPRGLSGPASNQGDTGLPGLPGVPGLPGIKGDVGLPGPTGIPGASGLKGVK
AEPGFMGMPGKDGLPGDPGIPGLKGETGRRGFPGLPGAPGLVPKPEEVIVPPGLLGLPGI
DGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGPDGTVGDPGTPGIPGPPGLEGV
SGKPGLFGLPGMPGRSVGVGYTLVKHSQSEQIPPCPIGMNKLWEGYSLLYVEGQEKAHNQ
DLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSRLEIPQYISH
CSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLED
FRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVSAPPSETLKAGQLRTRVSRCQVC
MKNL
NT seq 5055 nt   +upstreamnt  +downstreamnt
atgcacacagggcttgttgttctggttgctttctgcctagctgtggaactggtgactggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcgggctgcaaa
tgttttccagaaaaaggtgctcggggtcgaccgggatctattgggaaccaaggacctata
ggtgttccaggatttgctgggccagaaggtttggcagggccaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagtgcctgga
tttcaaggcatcaatgggattccgggccaccctggccagccagggcccagaggttttcgt
ggccttgatggctgcaatggttctattgggagtcctggtgtttccgggttggatgggttt
cctggtacacaggggccacctggtcgctttggtcccaaaggtcccaaaggagaacctgcg
tatgcccaaggtggccttaaaggaagtaagggtgaaaatggtcttcctggattggatggg
atttctggtccaaaaggtttccctggcccagcaggttctgtgggtcctataggattgcca
ggtttgcaggggccaccgggtgcaatggggccaccaggaccaaaaggtaacatgggatta
ggtttccaaggagagaaaggtgcaaagggagatgtcgggctacctggccctgcaggtccc
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagcaaag
ggtgagccaggccctaaaggattccctgggattggaggattacctggccctatgggcttt
gggggtatcggagaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggtttccagggagaaagggtcagtttggtcttcctggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttctctcgatagagaagatggactcatctcaggtttgccaggagatccc
gggattccagggactccaggccctcgaggagatgaagggattgttggtttaccaggcctt
cctggcacccgaggtctctcagctcttgatcgaggggcaccaggtctcatgggatttcca
ggtattccaggtattactggtgaaccaggagaccaagggagagcaacagttggattacca
ggcactccaggcataggtggtttaccgggtatgccaggacctccaggactgcctggtcca
gcacaaatcctcaatggagaacctggagaaccaggaagacctggacaacgggggccacca
ggagttttgggactaaaagggaccaaaggggatccaggtgattgtgcttgtgatggagga
gtcacaggagctggaccaaaaggtgcaccaggccctctgggtccaccaggaagccctggt
gaacctgggtttaagggttctagtggagatcctggcagtgtgggtgcacaagggctgcga
gggcctccggcttcacctggtcaaccaggttctccaggccgtaagggagaaaaaggagat
ccatcttttgcaagaggcagaggtctccatggggatcctggtgcaacaggagccagaggg
ccttctggcatcccaggaactcctggcagagatggattcccaggtttaccaggccagcca
ggtcctccgggtgatgttggactaggctttccaggcgaaaaaggcctgccaggattacct
ggctccaagggccggcgtggggagagcggtcttcctggcattggtttcccaggtcctagt
ggagttcgcggccctccaggtgacccaggaatggatggttttccaggacaaccaggtctt
ccaggtcctccagggatcaccttgccctgtgtagttcctggagggtttggtgcccctggg
cctccaggcataccaggacgtccaggtcccaagggcagaccggggtttccaggcattcca
ggtcaacctggattacgtggatcaaaaggacaaccaggtattccaggatcaatggcattg
ccaggagcaccaggctttcctgggcctcgtggagatcagggaccacaagggcttccagga
cttgatggaacagatggtttccctggaaagatgggaactcctggcttgtcaggggcaaaa
ggagctcctggtgaagtgtttggtgctgaaagaggagccctgggtgagcgtggcagacct
ggattcccaggagataaaggacttgttggagaacctggatttcctggacagaagggtgtt
gatggaaggcctggcttaccgggttttaaaggcgaacggggtaatccagggctccgaggt
attgatggattgcgaggacctcctggtcctggaggtccgtttggcattaaaggagaacca
ggtcccaggggagcagttggcttctcaggatcaccaggacttcgtggagtcaaaggacca
actggtgatgcaggtccaccaggccctgctggtatgaaaggcttcccaggtctagaaggt
tttccaggaccacctggggacagaggattcccagggtcacctgggcctttgggtagagat
ggacgtccaggtttctttggagcaaaaggtgaaaagggtcctcccgggttgattggcttt
cctggcatgccaggcctgcctggtatccctggggtgagtgggctgaaaggaattcctggg
tcagctggaagggaaggaaatattggatattctggaccctctggtctaaaaggtgacagg
ggtgatcgaggtctgcctggactcccggttcttaggcccccagaattggccttggcattc
aagggagacaaaggtgatcgtgggtcagctggactgagaggattccctggacctagaggt
gataaaggattccctggaccccgtggacaacctggtcttcctggtccacgaggatcgcca
accacagatagaggactacctggtgatgcagggttcccaggcctgcctggaccacccggc
ttgccaggacagaaaggacaggctggaatcataggattacccggatttccaggagaaagt
ggttcagagggtatctcaggagcaccagggttcccaggaactgttggtttccccggtcca
aagggtgacccaggggaatcacttggaatttctggtgggttaggagataaaggagaacga
ggggaccgtggattcccaggtgagagggggaaagatgggccaaagggtgaaccaggatac
ccaggaagcactggcctggatgggcctaaaggtgtcccaggtgaccttggccaagaagga
ccaccaggcctccctggaattgctgggttgcgaggaaatgcaggtctcccgggttctcca
gggcagcctggacctgtaggattcatcggactccctgggatagcagggccaaaaggattc
cctggatttcctggtttaaatggtctgaacggcttaccaggcacaaaagggtcacctgga
acaccaggtctgagtgaagctggactgaatggccctgcagggcttccaggtcctaagggt
gaagaaggttccccaggcattggcctaggagccccaggactccctgggcagaaaggatca
tcaggagacatgggtcctccaggtaccttgggtctgcctggtttaccaggacctcctggc
atctctcttccttcaaatatacctgggagacgtggtgatcctggccgtcctggagtggat
gggaatccaggccccccaggtcctccaggtcctcgagggctctccggcccagcctccaat
caaggtgataccggccttccaggtttacctggagttcctggtttgccaggcataaagggt
gacgtaggactccctggtccaactggaattccaggagcttcgggactcaaaggtgtgaag
gctgagccaggctttatggggatgccaggtaaagatgggcttccaggggaccctggaatt
cctgggctgaaaggtgaaactggccgtcgaggtttcccgggcctaccaggcgctccaggc
ctagtaccaaaaccagaagaagtcatagttcctccagggctacttggtctgccaggaatt
gatggggtccctggctatgctggagatcgtggatttcagggaccagatgggcagcaaggt
ccaaaaggtctgtcaggcagatcaggtcaggtgggccgtcctggtttaccagggccagat
ggcacagttggggatccaggaaccccaggtattccagggccaccaggattggaaggtgtc
tctggaaagccaggcctgtttggtttgcccggaatgccgggtcggagtgtaggcgttgga
tacactttggtgaagcacagccagtcagagcagatcccaccgtgcccaattggaatgaat
aagctctgggagggttacagcttgctgtatgtggaggggcaggaaaaggcgcacaaccag
gatctaggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatttactgc
aacatctatgaggtgtgctactatgccagccgaaatgacaaatcctactggctctccacc
actgctcccatccccatgatgccagtgagccgtctggagatcccacagtacatcagtcat
tgctcagtgtgtgaagcaccttcccaggctattgcagtacatagccaggacattaccatc
ccgcagtgccccgagggctggcgcagcctgtggatcggatactcttttctaatgcacact
gcagctggcgcggaaggcggaggtcagtcccttgtctcacccggctcttgcctcgaggat
ttccgtgctactcctttcattgaatgcaatggtgccagaggaacctgccattactttgca
aacaaatacagcttctggctgaccacagtcgaacgcacgcagcagtttgtcagtgctcct
ccctcagaaactctgaaagcaggacagctccgaacacgagtcagccgttgccaagtgtgc
atgaagaacttgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (2)   
   Pfam (2)   
All databases (75)   

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