KEGG   Chelonia mydas (green sea turtle): 102945413
Entry
102945413         CDS       T02989                                 
Symbol
CHD4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102945413 (CHD4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cmy03036]
    102945413 (CHD4)
Chromosome and associated proteins [BR:cmy03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102945413 (CHD4)
  Chromatin remodeling factors
   NuRD complex
    102945413 (CHD4)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT DUF1087 PHD Chromo HDA2-3 ResIII DEAD PHD_2 zf-PHD-like
Other DBs
NCBI-GeneID: 102945413
NCBI-ProteinID: XP_037766605
Position
1:complement(206101404..206125934)
AA seq 1914 aa
MASGIGSPSPCSAGSDDEEMEILLNNSIPQHPEPEEEPEEELLSEAETPKIKKKKKPKKL
KEPKVPKLSKRQKKELGDSSGEGNEFVEEEEEVLHSDSEGSDYTPGRKKKKKLGPKKEKK
NKAKRKEEEEEEEEDDDSKEPKSSAQLLEDWGMEDIDHIFTEEDYRTLTNYKAFSQFVRP
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVANVDAV
LPQPPADVPLRKAKTKEGKGPNARRKPKASPRVPDIKKPKTKKVAPLKIKLGGFSSKRKR
SSSEDEDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLKAGKRKKKGEDDSTVPVDGYE
TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKED
NSEGEEILEDVVGDPEEEDDHHMEFCRVCKDGGELLCCDACPSSYHIHCLNPPLPEIPNG
EWLCPRCTCPSLKGKVQKILIWKWGQPPLPTPVPRPTDADPNTPSPKPLEGRPERQFFVK
WQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGEEEKSRKRKNKDPKFA
EMEERFYRYGIKPEWMMIHRILNHSVDKKGNVHYLIKWRDLPYDQASWESEDVEVQDYDL
YKQAYWNHRELMRGEEGRPGKKIKKVKMRKLERPPDTPTVDPTVKYDRQPEYLDVTGGTL
HPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLST
IINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFH
VLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQ
NNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNM
PSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP
VAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFL
EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDS
DWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSK
TGSMSKQELDDILKFGTEELFKDEATEGGDSKEGEDSSVIHYDDKAIERLLDRNQDETED
TELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQE
DLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSEAARRP
SRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRD
LRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQ
EFEHVNGRWSMPELAEIEENKKLLQPGSPSPKTPTPSTPGDTQPNTPAPALPPEEGVKVE
EGASTREQGEPMESEKESNLAAAEAEVPMEQCAQPVETPPQEAKSPVNPPEAEEKKPEEP
EVKEEPMEMESKADVEKIEDRVSAEPSAEPPTINLDEKEEKKEDDKRDVVMLQNGEMLKD
SLDERHKKAVKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGII
NHGYARWQDIQNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRA
AYLNMSEDPSHPSMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLS
DMKADVTRLPATIARIPPVAVRLQMSERNILSRLANRSSEPPPPPPPQQVAQQQ
NT seq 5745 nt   +upstreamnt  +downstreamnt
atggcatcgggcattggatccccatcaccttgttctgctggcagtgatgatgaggagatg
gaaatcctgctgaataacagcatccctcagcacccagagcctgaagaagagccagaggaa
gagctgctatcagaggctgaaactcccaaaatcaagaagaaaaagaagcccaagaagctg
aaggaaccaaaagtgcccaaacttagcaagcgccagaaaaaggagctaggggacagctct
ggtgaggggaatgagtttgtggaggaagaagaggaggtgctgcactcagacagtgagggc
agtgactacacccctgggaggaagaaaaagaagaaattagggcccaagaaggaaaagaaa
aacaaagccaagcgcaaggaggaggaggaggaagaagaggaagatgatgactcaaaggaa
cccaaatcatctgctcagctcctggaagactggggtatggaggacattgatcatatcttc
acagaggaggattaccgtactctcaccaactacaaggctttcagccagtttgtcaggcca
ctcatagctgccaagaaccctaagatagctgtctcaaagatgatgatggtgctgggggcc
aagtggcgggagttcagcactaacaaccccttcaaaggcagttcaggggcctctgtggca
gctgcagcggctgcagctgtggctgtggtagagagcatggtggccaatgtggatgctgtc
ctgccccagccccctgctgatgtgccactacgtaaggccaagaccaaggagggcaaaggg
cctaatgcccggcggaagcccaaggccagtcctcgtgttcctgacatcaagaaacccaaa
accaagaaggtggctcctctgaaaatcaaactgggaggatttagctccaagcgtaagaga
tcatcaagtgaagatgaggatctggatgtggaatcagactttgatgatgctagcatcaat
agctactctgtttcagatggatccactagccgcagcagccgcagccgcaagaaactcaag
gctgggaaaaggaaaaagaaaggtgaggatgactccacagttcctgtggatggctatgag
acagatcaccaggactattgtgaggtgtgtcagcagggaggagaaatcatcctatgtgac
acctgtccccgtgcctaccacatggtctgcctggacccagacatggagaaagccccagag
ggtaaatggagctgcccacactgtgagaaggaggggatccagtgggaggcaaaggaggat
aactctgaaggcgaggagatcctggaggatgttgtgggagaccctgaggaggaggatgat
caccacatggagttctgccgggtctgcaaggatggaggggagctgctctgctgtgatgcc
tgtccctcttcctaccacattcactgtctaaatcccccactgccagagattcctaatggg
gagtggctgtgccctcgctgcacttgcccatcgctgaaggggaaggtgcagaagatcttg
atctggaagtggggccagcccccgctgcccacaccagtaccccgaccaactgatgcagac
cctaacactccctcccccaagcccctggagggccggcctgagcggcagttcttcgtcaaa
tggcagggcatgtcctattggcactgttcgtgggtgtctgagctgcagctggagctgcac
tgccaagtgatgttccgaaattaccaacgcaagaatgatatggacgagccaccctcaggg
gactttgggggtgaggaggagaagagccgcaagcgaaagaacaaggaccccaagtttgct
gagatggaggagcgcttctatcgctatgggatcaagcctgagtggatgatgatccaccgg
atcctcaaccacagtgtggataagaaggggaatgtccactatctgattaaatggagggac
cttccctatgaccaggcttcctgggagagtgaggatgtggaggtgcaggactatgacctc
tacaaacaggcctactggaatcacagggagctgatgagaggtgaagaaggtcggcctggc
aagaagataaagaaggtgaagatgcggaagctggaaaggcccccagacacacccacagtg
gatccaacggtgaagtatgaccggcagccagagtaccttgatgtaacaggagggacactg
cacccctatcagctggaggggctgaactggttgcgcttctcctgggcccagggcacagac
acgatcttggctgatgaaatggggctgggcaagacagtgcagacagctgtgttcctgtac
tctctgtacaaagagggccactcaaagggaccctttctggtgagtgccccactctccaca
attatcaactgggagcgggagtttgagatgtgggctccagacatgtatgtggtgacctac
gttggggacaaggacagccgggccatcatccgggagaatgagttctcctttgaggacaat
gccatacgtgggggaaagaaggcatccaggatgaagaaggaagcatctgtgaagttccat
gtgctgctcacctcctatgaactgatcacaattgacatggccattctgggttccattgac
tgggcctgtcttattgtggatgaagctcaccggctcaagaacaatcaatctaagtttttc
cgggtgctgaatggatattccctccagcacaagctactgctcacaggaacccctctgcag
aacaacctggaggaactgttccacctgctcaacttcctgacacctgagagattccataac
ttggaaggcttcctggaagagtttgcagacattgccaaggaggatcagatcaagaagctg
catgacatgttgggcccacatatgctgaggcgcctcaaggctgatgttttcaagaacatg
ccctccaagactgaactcattgtccgggtggagctgagccccatgcagaagaaatactat
aaatacattttgacaaggaacttcgaggcactgaatgcacgaggtggtggcaaccaggtc
tccctgctcaatgtggtcatggatctgaagaaatgttgtaaccacccctacctctttccc
gttgctgctatggaagctccaaagatgccaaatgggatgtatgatggtagtgccctgatc
cgggcatctgggaaactgctgctgctccagaagatgttgaagaacctcaaggaaggaggc
cacagggtgctcatcttctcacagatgactaaaatgttggatcttttggaggattttctg
gaacatgaagggtacaaatatgagcggattgatggtgggatcacagggaacatgcgccag
gaggccattgatcgcttcaatgctcctggtgctcagcagttctgcttcctgctttccact
cgagctggggggctcggtatcaacctggccacagcagacacagtgattatctatgattca
gactggaacccacacaatgacatccaggctttcagccgtgcacacaggatcggacagaac
aagaaagtgatgatttaccgttttgtgacacgggcttcagtagaagagcgtatcactcag
gtggccaagaagaagatgatgctaacacatctggtggtgaggccagggttgggctccaag
acaggctccatgtccaagcaggagcttgatgacatcttgaagttcggtactgaggagctc
ttcaaggatgaggccactgagggtggtgatagcaaagagggtgaggacagcagtgtcatc
cactacgatgacaaggcaatcgagcgactactggaccgaaatcaggatgagactgaagac
acagagctgcagggcatgaatgagtatctcagctccttcaaggtggcccagtacgtggta
cgggaagaagagatgggggaggaggaggaggtggagcgggagatcattaagcaagaagag
tcagtggaccccgattactgggagaagttgctgcgtcaccactatgaacagcagcaggag
gacctggctaggaacctgggcaagggtaaacgtatccgcaagcaggtcaactacaatgat
ggctcccaggaggacagagattggcaggatgaccagtcagataaccagtcggattattca
gtggcttctgaggaaggagatgaggattttgatgagagatctgaagctgctcgccggccc
agtcgcaaaggcctgagaaacgacaaagacaagcccctgcctccccttcttgcccgtgtg
ggagggaacattgaagtgctgggcttcaatgcccgccagcgcaaggccttccttaatgcc
atcatgcgctatgggatgccaccccaggatgccttcaccacccagtggcttgtccgggac
ctgcgtggcaagtctgagaaggagttcaaggcctatgtctcgctgttcatgcgtcaccta
tgtgagccaggagcagatggtgcggagaccttcgcagatggggttccacgggaggggctg
tcccgccagcatgtcctcacccgcattggggtcatgtcactcatacgcaaaaaggtgcag
gaattcgagcatgtgaatgggcgctggagtatgccagaactggcagagatagaggagaac
aagaagcttttgcagccgggctcgccctcccccaaaacccccacaccctccacgccaggg
gacacacagcctaacacacctgcccctgcccttccacctgaagagggtgtgaaggtggaa
gaaggagccagtactagggagcaaggggagcccatggagtctgagaaggaatccaaccta
gctgctgctgaagcagaggtcccaatggagcagtgtgcccagcctgtggagacaccccca
caagaggcgaagtccccagtgaaccccccagaagcagaggagaaaaagccagaggaacca
gaggtgaaggaggagccaatggaaatggaaagcaaagctgatgtggagaagattgaagat
agagtgtctgctgagccctctgctgaacctccgaccatcaacctggatgagaaggaggag
aagaaggaggatgacaagagagatgtggtgatgctgcagaatggggagatgctgaaggac
tctcttgatgagaggcacaagaaggcagtgaagcagcgcttcatgttcaacatagctgat
ggtggcttcactgagttgcattctctatggcaaaatgaagaacgagcagcaactgtcacc
aagaaaacctacgagatctggcaccggcgccatgactactggctcctggctgggatcatc
aatcatggctatgcccgctggcaggacattcagaatgatccacgttatgccatcctcaat
gaacccttcaagggtgagatgaacaggggcaacttcctggagatcaagaataagttcctg
gccaggaggttcaagctgctggagcaggcactggtgattgaggagcagctgcggcgagct
gcctatctgaacatgtcagaagatccatcgcacccgtctatggccctcaatacacgtttt
gctgaggtggagtgtctggcagagagccaccagcatctgtccaaggagtcaatggctggg
aacaagccagccaatgctgttcttcacaaagttttgaagcagctggaggagcttctgagt
gacatgaaggcagatgtgactcggctgcctgccactattgcccgcatcccacctgtggct
gtgcgcctccagatgtctgagcgtaacatcctcagtcgattggccaatcgtagcagtgaa
cctcctcccccaccacctccccaacaggtggcccagcagcaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (13)   
   Pfam (13)   
All databases (60)   

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