KEGG   Cryptococcus neoformans var. neoformans JEC21: CNF00780
Entry
CNF00780          CDS       T00243                                 
Name
(RefSeq) cleavage and polyadenylation specific protein, putative
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CNF00780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNF00780
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNF00780
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CNF00780
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CNF00780
SSDB
Motif
Pfam: CPSF_A MMS1_N Coat_P
Other DBs
NCBI-GeneID: 3258187
NCBI-ProteinID: XP_571490
UniProt: P0CM62
Position
6:join(244380..244685,244746..244898,244954..245180,245231..245952,246009..246160,246219..246287,246355..246516,246582..246717,246765..246934,246993..247508,247570..247929,247978..248170,248223..248449,248509..248673,248729..249023,249072..249209,249263..249392,249448..249622)
AA seq 1431 aa
MHALHQTLLPSSSIHHSLFLPHFTPSTIYPLPKPPAALDTLDVKVIGNLVVAGAEVLRVF
EIREESVPIIENVKLEEDVAEGEKDVQMEEVGDGFFDDGHAERAPLKYQTTRRLHLLTQH
ELNGTITGLAATRTLESTIDGLDRLIVSFKDAKMALLEWSRGDIATVSLHTYERCSQMNT
GDLQSYVPLLRTDPLSRLAVLTLPEDSLAVLPLIQEQSELDPLSEGFSRDAPYSPSFVLS
LSDMSITIKNIQDLLFLPGFHSPTIALLFSPMHTWSGRLQTVKDTFCLEIRTFDLSSGTS
YPLLTSVSGLPSDSLYLVACPSELGGIVLVTSTGIVHVDQGGRVTAACVNAWWSRITSLK
CSMASVSQKLTLEGSRCVFVTPHDMLLVLQNGAVHQVRFSMEGRAVGVIEVLDKGCVVPP
PSDLTVAGDGAVFVGSAEGDSWLAKVNVVRQVVERSEKKKDEMEVDWDEDLYGDINDAAL
DEKAQELFGPAAITLSPYDILTGVGKIMDIEFGIAASDQGLRTYPQLVAVSGGSRNSTIN
VFRRGIPITKRRRFNELLNAEGVWFLPIDRQTGQKFKDIPEAERATILLSSEGNATRVFA
LFSKPTPQQIGRLDGKTLSAAPFFQRSCILRVSPLEVVLLDNNGKIIQTVCPRGDGPKIV
NASISDPFVIIRRADDSVTFFVGDTVARTVAEAPIVSEGESPVCQAVEVFTDTTGVYRTF
EPSKSESSEPISHQIDSENKPNITNGINGTTARSARQTQLTPQQIKRLQEQEPAITTEAP
SMETAINSPHGTQWLALVTRGGELQIRSLPDLQIVLQSEGLASSAPSFTDDLGENPGYVL
GEKREEGEEEDEIIQMVFCPIGKGTVRQHLLALHHSGRLNAYEAQPRFTVDASSHSRRSL
AVRFRKVHTQLLPISGGVGTTNGNARLPYTIVPFNNIEGLTGAFITGEKPHWIISSEAHP
LRAFALKQAAMAFGKTTHLGGKGEYFIRIEDGSFICYLPPTLNTDFAIPCDRYQMERAYT
NITFDPTSAHYVGAASIEVPFQAYDEEGEIQLGPDGPDLIPPTNQRSTLELFSQGSDPWK
VIDGYEFDQNEEVMSMESVNLESPGAPGGYRDFIAVGTGFNFGEDRATRGNTYIFEILQT
VGPQGGGGPGSVPGWKLVKRTKDPARHPVNAVNHINGYLLNTNGPKLYVKGLDYDSQLMG
LAFLDIQLYATTVKVFKNFMLIGDLCKSFWFVSLQEDPYKFTTISKDLQHVSVVTADFLV
HDGQVTFISSDRNGDMRMLDFDPTDPDSLNGERLMLRTEYHAGSAATVSKVIARRKTAEE
EFAPQTQIIYATADGALTTVVSVKDARFKRLQLVSDQLVRNAQHVAGLNPRAFRTVRNDL
LPRPLSKGILDGQLLNQFALQPIGRQKEMMRQIGTDAVTVASDLQALGGFW
NT seq 4296 nt   +upstreamnt  +downstreamnt
atgcacgctctccaccagacccttctcccctcatcctccatacaccactccctcttcctc
ccacacttcaccccgtcaaccatctaccctctcccaaaaccacctgcagcgctcgatact
ctcgatgtcaaggtcatcggcaaccttgtcgtcgccggagcagaagtcctgagagtgttt
gaaatacgggaagagagtgtcccgataatagaaaatgtcaaactggaagaagatgtggct
gagggcgagaaggatgtgcagatggaagaagtcggcgacggattctttgacgatggtcat
gcagaacgagctccgttaaaataccaaacgactaggcggctgcatctcttgacgcaacat
gagctcaatggcacgataacgggtttggcagctacgagaacgcttgagagtaccatcgac
ggtttagacaggttgattgtgtcgttcaaggacgcaaagatggcacttttggaatggtca
agaggggatatcgcaacagtgtctttgcatacctacgagcgatgctctcaaatgaacact
ggtgacttgcagagctatgtcccactgctcaggacagatccgttatcgagattggctgtt
cttactcttcctgaagactcgttggcggttttgcctttgattcaagagcagtcagaatta
gacccattatcagaaggcttctcccgtgatgcaccttactcgccctcatttgttctctcc
ctttcagacatgtctataaccattaagaacattcaagatctccttttccttcccggcttc
cactcccccactatcgcactcctcttttcacccatgcacacttggtcaggtagattacaa
actgttaaagatacattttgcttggagattcgtacctttgacctttcttccggcacttcc
tatcccctcctcacatctgtctctggtctccctagcgacagtctgtaccttgtcgcatgc
ccttctgaactcggcggcatcgtccttgtgaccagcaccggtatcgtgcatgtcgatcaa
ggtggtcgagtgactgctgcttgcgtcaatgcctggtggtcccgaattacatccctcaaa
tgctcaatggcttctgtatcccagaaacttaccctcgaaggatctcggtgtgtctttgtc
actcctcatgacatgctgctcgtccttcagaatggtgccgtccatcaagtgaggtttagc
atggaaggcagggcggtcggagtgattgaagtgctagataagggatgtgtcgttcctccc
ccatcagatttgactgtggcgggtgatggtgccgtgtttgtcggttctgcggagggtgat
tcatggttggccaaagtcaatgttgtcaggcaggtggtagaaaggtcagagaagaagaag
gatgagatggaagtagactgggatgaagatctgtatggtgatattaatgatgctgcactt
gacgaaaaggcccaagaactgttcggtcccgctgcaatcactctttctccttatgacatt
ttgacaggtgttgggaagattatggatattgagtttggtatcgctgcttccgatcaagga
ttacgcacttatccccaattggtggctgtcagtggtggatctcgcaactcaaccatcaac
gtcttccgtcgaggtatccctataacaaagcgccgccgattcaacgagctgctcaatgcc
gaaggtgtctggttcctccctatcgacagacaaacggggcaaaaattcaaggatatcccc
gaagcggagagggcaacaatattgctgagcagtgaaggaaatgccaccagagtctttgcg
ttgttctctaaacctacgccccagcagattggtcggcttgacggcaagaccttgtcagca
gcaccattcttccagcgatcatgcatcctgcgtgtttctcccctagaggtcgttctcttg
gataataatggtaaaatcattcaaaccgtctgccctcgtggtgatggtcccaaaattgta
aatgccagtatctcggatccgttcgtgatcatccgccgagcggacgatagcgtcactttc
tttgtcggtgatactgttgcaagaacggttgctgaagctcccatcgtctcggaaggagaa
tctcccgtttgccaggcggtagaggtctttacagacaccaccggcgtctaccgtactttc
gagccttccaaatccgagtcctcggagcccatctcccaccaaattgactctgaaaataaa
cccaacatcacgaacggcataaatggcaccactgcgcgttccgctcgccaaacccagctc
actcctcagcagatcaagcgattacaagaacaagaacctgccatcaccacagaagcacct
agcatggagactgcaatcaactctccacatggcactcaatggcttgcgcttgtgacgagg
ggtggcgagctacagatacggtcgttgcccgatttgcagattgttttgcagagtgagggt
ttggcatcgtctgcaccgagttttacggatgatttgggtgagaatccggggtatgtactt
ggtgagaaaagggaagagggtgaagaggaggatgagattatacagatggtgttctgtccc
attggaaagggaactgtcaggcagcacttgctcgctcttcaccactcgggtcgattaaac
gcctacgaagctcaacctcgcttcaccgtcgatgcatcatcccattctcgtcgttcgctc
gcagttcgattccgtaaagttcatactcaacttcttcccatctcgggcggtgtcggtacc
accaacgggaacgctcgactgccttacaccatcgtccccttcaacaacattgagggtttg
accggagcgttcattactggagagaaaccgcattggattatctcgagtgaagctcatcct
ctgagggcgtttgcgttgaaacaggcggcgatggcgtttggtaaaacgactcatttgggt
ggaaagggagaatacttcattagaatagaagatggctccttcatctgttacttacccccc
acactcaacactgactttgctatcccttgtgatcggtaccaaatggaacgagcttatacc
aatataacattcgatccaacatctgctcattacgtcggagctgcttccattgaggtgccg
tttcaggcgtatgatgaagagggagagatccagctggggccagatggtcctgacctcatt
cccccgactaaccaacgatcaactcttgaacttttctcgcaaggttctgatccttggaaa
gttattgatggttatgagtttgatcaaaacgaagaagtcatgagtatggaaagtgtgaac
ttggaatcgcctggtgcgccgggtggctatagggactttatcgccgtgggaactggtttc
aactttggtgaagatcgagctacgagagggaacacatatatatttgagatccttcaaact
gtcggaccgcaaggagggggaggtcctggtagcgtaccagggtggaaattggttaagagg
acgaaagaccccgcgagacatcccgtgaatgctgtaaatcacattaacgggtacttattg
aacaccaatggtccgaagctctacgtaaaaggccttgactacgactctcagctgatgggt
ctcgctttcctcgatatccaattatacgctaccactgtcaaagtgtttaagaactttatg
ctcattggcgacctttgcaagagtttttggtttgtttcgcttcaagaagatccctacaag
ttcacgaccatcagtaaagatttgcaacatgtctcggtagtgactgcagacttccttgta
cacgatggccaggtgacatttatctccagcgacaggaatggtgacatgagaatgcttgac
ttcgatcccactgaccccgactcgctgaatggtgaacgtttgatgctgagaaccgagtac
catgctggatctgccgccacagtatcgaaggtgattgccaggaggaagacagcagaggaa
gaatttgcaccgcaaacacagatcatctatgctacggccgacggagcgttgacaactgtt
gtatctgtcaaggatgcgaggttcaagcgattacagctcgtatctgatcaactggtcagg
aacgcccagcatgttgcgggcctcaaccctcgggccttcagaactgttcgtaacgacctc
ttaccacgccctttatcgaagggtatcctggatggtcaacttctcaaccaattcgctctc
caaccgataggaaggcaaaaagagatgatgcgacagattggtacggacgccgttactgtc
gctagtgatttgcaggccttaggcggtttctggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (36)   

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