KEGG   Cryptococcus neoformans var. neoformans JEC21: CNI01600
Entry
CNI01600          CDS       T00243                                 
Name
(RefSeq) pre-mRNA splicing factor, putative
  KO
K12859  U5 snRNP protein, DIM1 family
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNI01600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cne03041]
    CNI01600
Spliceosome [BR:cne03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    CNI01600
SSDB
Motif
Pfam: DIM1 Thioredoxin
Other DBs
NCBI-GeneID: 3259706
NCBI-ProteinID: XP_572796
UniProt: Q5KBS2
Position
9:join(460810..460829,460877..461037,461090..461165,461221..461268,461324..461351,461411..461480,461530..461555)
AA seq 142 aa
MSYFMTHLHSGWHVDQAILVEEDRVVCIRFGHDHDEECMAMDETLYGVSEKVQNFAVLYL
VDITEVPDFNKMYELYDNCTLMFFYRNKHIMIDLGTGNNNKINWAITDKQELIDIIETVY
RGASKGRGLVVSPKDYSTRHKY
NT seq 429 nt   +upstreamnt  +downstreamnt
atgtcttattttatgacccatcttcactctggctggcatgtcgaccaagccatcctcgtc
gaagaagatcgtgtcgtctgtatccgtttcggccatgaccatgatgaagaatgtatggct
atggacgagacactctatggagtctctgaaaaggtccaaaattttgccgttctctatttg
gtcgacatcacggaagttcctgatttcaacaagatgtacgaattgtacgataattgtaca
ctcatgttcttctaccgaaataaacatatcatgatcgacttgggaacgggtaacaacaat
aagatcaactgggctataacggacaaacaagaactcattgatattatcgagactgtctac
cggggggcgtccaaaggtcgaggtctcgtcgtttctccaaaagattattctacccgacac
aagtattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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