KEGG   Cryptococcus neoformans var. neoformans JEC21: CNI01770
Entry
CNI01770          CDS       T00243                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III polypeptide, putative
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03020  RNA polymerase
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNI01770
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNI01770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNI01770
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNI01770
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CNI01770
  RNA polymerase III system
   RNA polymerase III
     CNI01770
  RNA polymerase I system
   RNA polymerase I
     CNI01770
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CNI01770
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 3259407
NCBI-ProteinID: XP_572666
UniProt: Q5KBQ4
Position
9:complement(join(492821..492870,492928..493040,493106..493239,493322..493388,493561..493643))
AA seq 148 aa
MSDDERMDTGDFEGGDYEQDYVDPDTLNYENEENAEEEAANGEVDETMIIESGAPEGDRP
RTGKAAKPNEIRVTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAA
KKIPLVIRRYLPDNSFEDWKVEELIVQE
NT seq 447 nt   +upstreamnt  +downstreamnt
atgtctgacgacgagcgaatggacactggcgatttcgaaggaggtgactacgagcaggac
tacgtggaccccgataccctcaactacgagaacgaagaaaatgctgaggaagaggccgcc
aatggcgaggtcgatgaaaccatgatcatcgaatcaggtgctccggaaggcgaccgtccc
cgaacagggaaggctgctaagcctaatgagatccgagtgacgactccttatatgacaaag
tacgagcgagcaagagtactgggtaccagggctttgcagattagtatgaacgcccccgtc
cttgtgcccgtggaaggagaatcagatcctcttgagattgcgatcaaagagcttgccgcg
aagaagatccccctcgtcatacggcgataccttcctgacaactcttttgaggactggaag
gttgaggagctcatcgttcaggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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