KEGG   Cryptococcus neoformans var. neoformans JEC21: CNN00630
Entry
CNN00630          CDS       T00243                                 
Name
(RefSeq) DNA replication factor, putative
  KO
K10756  replication factor C subunit 3/5
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03030  DNA replication
cne03410  Base excision repair
cne03420  Nucleotide excision repair
cne03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CNN00630
   03410 Base excision repair
    CNN00630
   03420 Nucleotide excision repair
    CNN00630
   03430 Mismatch repair
    CNN00630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cne03032]
    CNN00630
   03036 Chromosome and associated proteins [BR:cne03036]
    CNN00630
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNN00630
DNA replication proteins [BR:cne03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    CNN00630
  DNA Replication Termination Factors
   ELG1-RFC complex
    CNN00630
Chromosome and associated proteins [BR:cne03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    CNN00630
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     CNN00630
  Check point factors
   HRAD17(Rad24)-RFC complex
    CNN00630
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_14 DUF815 AAA_16 AAA_11 DNA_pol3_delta AAA_22 AAA_30 AAA_assoc_2 RuvB_N AAA_5 AAA_3 AAA_18 AAA_19 AAA_24 DEAD ATPase_2 ResIII bpMoxR AAA_28 nSTAND3 AAA_25 Mg_chelatase AAA_7 Viral_helicase1 AAA_33 MCM TIP49 RNA_helicase
Other DBs
NCBI-GeneID: 3255521
NCBI-ProteinID: XP_568597
UniProt: Q5K796
Position
14:join(204598..204764,204830..204894,204966..205022,205086..205242,205319..205392,205468..205627,205709..205790,205859..205988,206104..206236,206322..206418)
AA seq 373 aa
MTEPMDIDTPTSGPASGAQPRNAMAALMANAKGKGKEIASPAADGKAVDDKEGLPWVEKY
RPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPAYRKHI
LELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTK
NVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAILK
LSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLIT
SLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLG
AFKVAVELSQRKI
NT seq 1122 nt   +upstreamnt  +downstreamnt
atgacagaaccaatggacatagacacgcctacttccggcccagcttccggcgcccaacct
cgaaacgcgatggcggcgctcatggcgaatgcgaagggaaaaggcaaggagattgcctcc
ccagctgcggatggaaaggccgtggatgacaaagagggtcttccttgggtggagaagtac
agacctgtttcgcttgacgacgttgtctcacacaaggatattaccagtaccatcgaaaag
tttatcgaagccggacgattacctcatctcttgttatacggacccccaggtaccggtaaa
acatcgaccgtcctcgcccttgcccgtcggctatatggacctgcgtacaggaaacatatc
ctcgagttgaacgcttcagatgatcgagggattgatgtggtgcgagagcagattaagaat
ttcgcaatgaccaaggtgctattctcaaaaggtttcaagttggtcattttagatgaagcg
gatatgatgacacaagcagctcaatctgcacttcgtcgagtgatcgaacagcacactaag
aatgtgcgattctgtatcctctgcaactatgtcaacaaaatcacccctgctatccaatct
cgatgtaccaggtttaggttctctcccttgccagaaaaagaaatacaagtcaaggtggat
gaggtcgtgcaaaaagaaggggtgaaccttacggatgatggtcgggatgcgattctcaaa
ttatctcgaggcgatatgcgacgggccctcaacgtcctccaggcatgtcacgcggcgtac
gatatagttgatgaaacggccgtttacaactgtacaggtaacccgcaccccagggatatc
gagcgtgtcgtacagagtatgatggcagacgaattcgggaccgcttactcgcttatcacc
tctcttaaaattgaaaaaggtcttgcgctgcaagatttgattgcaggcgcatacgaattc
ttagatactgtcgaattgccaaagcaaagcaggatatacctgctcgatcatctgggaagt
accgagcaccgactatcattaggcggttcggaaaagatgcagctcacagcattgttggga
gcgttcaaagtcgccgtagaactttctcagagaaagatttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (32)   
   Pfam (32)   
All databases (57)   

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