KEGG   Actibacterium sp. EMB200-NS6: TQ29_05925
Entry
TQ29_05925        CDS       T04096                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
con  Actibacterium sp. EMB200-NS6
Pathway
con03420  Nucleotide excision repair
con03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:con00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    TQ29_05925
   03430 Mismatch repair
    TQ29_05925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:con03400]
    TQ29_05925
Enzymes [BR:con01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TQ29_05925
DNA repair and recombination proteins [BR:con03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TQ29_05925
   MMR (mismatch excision repair)
    Other MMR factors
     TQ29_05925
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 PcrA_UvrD_tudor AAA_11 DEAD CarD_TRCF_RID
Other DBs
NCBI-ProteinID: ALG89813
Position
1195998..1198358
AA seq 786 aa
MSRFDEDEAFEAGAKQSLAARAMAARPAPYLDGLNPAQRAAVEALEGPVLMLAGAGTGKT
RALTARIAHLLNTGTARPNEVLAVTFTNKAAREMKERVAGLLGQTIEGMPWLGTFHSISV
KLLRRHAELVGLKSNFTILDTDDQIRLLKQLIVAANIDEKRWPARQLAGVIDNWKNRAWT
PDKVPAAEASAFNGRGVALYAAYQDRLKTLNAVDFGDLLLHVVTIFQAHDDLLQQYQRWF
RYILVDEYQDTNVAQYLWLRLLAGGHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGA
TVVRLEQNYRSTAHILAAASGIIDANKGRLGKTLWTAAEGGEKLRLIGHWDGEEEARWIG
EEVEALQSGTRGLEPLSLDDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIR
DAMAYFRVAVSPDDDLAFERIVNTPKRGLGDKAQQKMQAMARGNGVSLVEGARLLLAAKG
LTGKGAVELKKLLDGIGRWHGAALGDRAGHIELAEMILEESGYTEHWQNDKTPEAPGRLE
NLKELVKALEQFENLQGFLEHVALIMDNETEETGAKVSIMTLHGAKGLEFPAVFLPGWED
GLFPSQRSMDETGLKGLEEERRLAYVGITRAEKLCTISFAANRRVYGQWQSALPSRFIDE
LPEDHVDVLTPPGLYGGGYGAAGMQGGIEERAASANVYNSPGWKRLQERSQTRPVSQPRE
SRNIVIDAQAVSSFTAGDRVFHQKFGYGTVMGIEGDKLDIEFDKAGAKKVVARFVVTAAQ
ADDVPF
NT seq 2361 nt   +upstreamnt  +downstreamnt
atgagcaggtttgacgaagatgaggccttcgaggccggggcgaagcagtcgctggcggcg
cgcgcgatggcggcgcggcccgcgccctatctggacgggctgaacccggcgcagcgcgcg
gcggtcgaggcgctggaggggccggtgctgatgctggcgggggcgggcacgggcaagacc
agggcgttgaccgcgcggatcgcgcatctgctgaacacaggcaccgcacgccccaacgaa
gtgcttgccgtgacctttaccaacaaggccgcccgcgagatgaaggaacgggtggccggg
ctgttggggcagacgatcgagggcatgccctggctgggaacgtttcattcgatcagcgtc
aagctgttgcgccgccatgccgaactcgtcgggctgaaatcgaatttcaccattctggat
acggatgatcagattcggctgctcaagcaactgatcgttgcggccaatatcgacgaaaag
cgttggcccgcgcggcagctggccggcgtgatcgacaactggaaaaaccgcgcctggacg
cccgacaaggtgcccgcggccgaggcgtcggccttcaacgggcgcggcgtggcgctgtat
gccgcctatcaagaccggttgaagacgctgaacgccgtcgatttcggcgatctgctgctg
catgtggtcacgatctttcaggcccatgatgacctgttgcagcagtatcagcgctggttc
cgctatatcctggtggacgagtatcaggataccaacgttgcccaatacctgtggctgcgg
cttctggcgggcgggcatcgcaacatctgctgcgtgggtgatgacgatcagtcgatctac
ggctggcgcggcgccgaggtgggcaatatcctgcggttcgaaaaggattttcccggcgcg
acggtggttcggctggaacagaattatcggtccaccgcgcatattctggccgccgcttcg
ggcatcattgatgccaacaagggccggctgggcaaaaccctgtggacagcggccgagggc
ggcgaaaagctgcgcctgatcggccattgggacggcgaggaagaggcgcgctggattggc
gaagaggtcgaagcgctgcagtcgggcacgcgggggctggagccgctttcgctggatgac
atggcgattctggtgcgcgcctcgcatcagatgcgcgccttcgaagaccggtttctgacc
atcggcctaccgtaccgcgtgatcggcggcccgcgattctatgagcggatggagatccgg
gatgcgatggcctatttccgcgtcgccgtgtcgcccgacgacgatctggcgttcgagcgc
attgtgaatacgcccaaacgcggccttggcgacaaggcgcagcagaaaatgcaggcaatg
gcccgcggcaatggcgtttcactggtcgaaggggcgcgcctgttgctggccgccaaaggg
ctgacgggcaagggcgcggtggagctgaagaaactgctggacggcatcggccgctggcat
ggtgcagcgctgggcgacagggcgggccatattgagctggccgagatgattctggaggaa
tcgggctataccgagcattggcagaacgacaagacgccagaggcgccgggccgactggag
aacctcaaggagctggtcaaggcgctggaacagttcgagaatcttcaaggattcctcgaa
catgtcgcgctgatcatggataatgaaaccgaagagacgggcgccaaggtctcgatcatg
acgctgcacggcgccaaggggctggaattccccgccgtctttctgcccggctgggaggat
ggcctgttccccagccagcgctcgatggatgaaaccggcctcaaagggctcgaggaagag
cgccgcctggcctatgtcggcattacccgggccgaaaagctgtgcacgatttcctttgcc
gccaaccggcgtgtctatggccagtggcaatcggcgctgccttcgcgctttatcgacgaa
ctgcccgaggatcacgtcgatgtgctgacgccgccggggctgtatggcggcggctatggc
gccgccggaatgcaaggtggaatcgaagagcgggctgcctctgccaatgtctataactct
cccggctggaagcgcctgcaagagcgtagccagacgcggccggtcagccagccgcgggaa
agccgtaacattgtgattgatgcgcaggccgtatccagcttcaccgccggtgaccgggtg
tttcatcagaaattcggctacggcacggtgatgggtatcgagggcgacaagctggatatc
gagttcgacaaggccggtgcgaaaaaggttgtggcgcgtttcgtcgtgaccgccgcccag
gccgatgacgtgcccttctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (81)   

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