KEGG   Colwellia sp. PAMC 20917: A3Q34_03255
Entry
A3Q34_03255       CDS       T04511                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
coz  Colwellia sp. PAMC 20917
Pathway
coz03030  DNA replication
coz03430  Mismatch repair
coz03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:coz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3Q34_03255 (dnaE)
   03430 Mismatch repair
    A3Q34_03255 (dnaE)
   03440 Homologous recombination
    A3Q34_03255 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:coz03032]
    A3Q34_03255 (dnaE)
   03400 DNA repair and recombination proteins [BR:coz03400]
    A3Q34_03255 (dnaE)
Enzymes [BR:coz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A3Q34_03255 (dnaE)
DNA replication proteins [BR:coz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     A3Q34_03255 (dnaE)
DNA repair and recombination proteins [BR:coz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     A3Q34_03255 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon Sf6_terminase HipA_C
Other DBs
NCBI-ProteinID: AOW75957
UniProt: A0A1D8RS85
Position
complement(759369..762926)
AA seq 1185 aa
MSEQVLVDAPELVSVKAQPKFIHLRVHSDYSLCDGLNKVKPIVAKASALGMPAIALTDQT
NLCGLVKYYHAAHGAGIKPIIGCDLWVKSDELENELSRIVVLATNNVGYKNLTELISKAY
LRGHVQGKAVIDKHWLIDYAPGLILLSAGREGDIGKALIKGNFELVNKMVDFYQSYFPDC
FYLELIRTNRENEENYIHLAVELAEKASLPVVATNEVMFISPKRFDAHEIRVAIHDGFTL
NDKRRPKKYSKEQYLRTEEEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYVLPDFPTEG
LSIEDYLVKVSEEGLQDRLETLFDKDAADFAEKRKPYDERLAIELKVVNNMGFPGYFLIV
MEFIQWSKDNNIPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDI
DFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP
PTPGMTLAKAFEEEPKLPEAYAQDSEVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITD
FAPLYCDEEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLLKQGKAPI
DITRINLEDPASFKVLLRSETTAVFQLESSGMKSLIAKLKPDCFEDIIALVALFRPGPLQ
SGMVDNFIERKHGREEVSYPDATWQHIDLKPILEPTYGIILYQEQVMQIAQVLAGYSLGG
ADMLRRAMGKKKPEEMAKQRDGFEQGAINRGVDGELAMKIFDLVEKFAGYGFNKSHSAAY
ALVSYQTLWMKTHYPAPFMAAVMSADIDNTDKIVTLVDECGNMGIDLLPPDVNAGQYKFT
VNEQDQIVYGIGAVKGVGEGPIDAIIAAREAGGEFTDLFDFCARLDLKKINKRVLEKLVK
AGAMDSLGPKKIINGKEVPHRAVLFETLPEAIKAADQYAKAQAVGQNDLFGLINEASAEP
RQAFKDVPMWAEEVWLNAEKETLGLYLTGHPINRFLSEIKHYATGRLVSLQPTSKDKTTV
AVGLVLGVRVMVNKRGRRWALVTLDDKSARMDIRLFPDDYDNFAELLVSDAILVCSGQVS
FDEYSGGITMTARDIMTVGDARENYVSSVDINVNKNKAGAGFIDKFTEVLTPYKDGTCPV
RLFYQRDEAKAMLELGVQWRVTPADPLLHELRTLLGDGDVTLRFK
NT seq 3558 nt   +upstreamnt  +downstreamnt
atgtcagagcaagtattagttgatgcacccgaactagtgtcagtcaaagctcaaccaaaa
tttattcatttgcgagtgcacagtgactattcattatgtgatggtttaaataaagtaaaa
cctattgtcgccaaagcttcagctttaggaatgccggccatcgcgctaaccgaccaaaca
aacctctgtggtctggttaaatattatcatgctgctcatggcgcgggaataaaacctatt
attggttgcgatctctgggttaaaagtgatgaattagagaatgaactttcccgcattgtt
gttttagccacaaataatgtcggctacaaaaatctcactgaactcatttctaaagcttac
cttcggggtcatgttcaaggcaaggcggttatcgataagcattggttaattgactatgct
ccgggtttgatcttattgtcggcgggtcgcgaaggtgatattggtaaagcgctgattaag
ggaaatttcgagctggtcaataaaatggtcgatttttaccaaagctactttcctgattgc
ttttatcttgaactgatcagaaccaacagagaaaacgaagaaaactatatccatttggca
gtcgagctggcagaaaaagcgtcactccctgtggtagcgacgaacgaagtgatgtttatt
tctcctaagcgctttgatgcccatgaaatacgtgttgccatacatgatggttttaccctc
aacgataaacgtcgcccgaaaaaatattctaaagaacagtaccttcgaactgaagaggaa
atgtgtgagttattttcagacattcctgaagcaattgagaatacggttgaaatcgccaaa
cgctgtaatgttacggttaggcttggagagtatgttctccctgactttccaacagaaggt
ttatcgatagaagattacttggttaaagtgtctgaagaaggtttacaagaccgcttagag
accttatttgataaagacgcagcagattttgctgaaaagcgtaaaccctacgacgaacgt
ttagccattgaacttaaagtggttaacaatatgggctttcccggttattttttaatcgtg
atggaatttattcagtggagtaaagataataatattcctgtgggtcctggccgtggttct
ggcgccggctcgttggtcgcttatgcccaaaaaattaccgacttagatccccttgaatat
gatttgctctttgaacgttttttgaatcctgaacgtgtctctatgccagattttgatatc
gatttctgtatggacaggcgtgatgaagttattgatcacgttgctgaactatatggccgt
gatgccgtgtcgcaaattattacctttggcaccatggcagccaaggcggttattcgagat
gttggccgagtactcggtcacccttatggttttgttgaccgcatctctaagcttataccg
ccaacaccaggcatgacactagccaaggcctttgaagaagagcctaagttgccagaagct
tacgcacaagacagtgaagtcaaagatttaattgatatgtgccgtattttagaaggcaca
acacgaaatgccggtaaacatgccggtggtgtggtgatatcaccaaccaccattaccgac
tttgcgccactttactgtgacgaagagggtaaaaacccggtaactcagttcgataaaaat
gatgttgaagatgccggtttagttaaatttgatttcttgggacttcgcacgttaacgatt
ttgcagtgggccatcgaaatggctgatgcaaaattgttaaaacaaggcaaagcgcctatt
gatattacccgcattaatttagaagacccagccagttttaaagtgttattaagatctgag
acaacggcagtgtttcagctcgagtctagtggtatgaaatcacttattgccaaattaaaa
cctgattgctttgaagatattatcgccttggttgcgctctttagacctgggccattgcag
tctggcatggttgataactttattgaacgtaagcatggtcgtgaagaagtaagctatccg
gatgctacttggcaacatattgacttaaagcctattcttgaaccgacttacggtattatt
ttatatcaagaacaggttatgcaaattgcgcaagtattggcgggttactcgttaggtggc
gcggatatgctacgccgcgctatgggtaagaaaaaacctgaagaaatggccaaacagcgt
gatggctttgagcaaggcgcgatcaaccgaggtgttgacggcgaacttgcgatgaagatc
ttcgatctggtagagaaatttgcgggttatggtttcaataaatcgcactcagcggcttac
gccttggtttcttatcaaaccttatggatgaaaacacattaccctgcgccatttatggca
gcggtaatgtcagccgacatagataacaccgataaaattgttaccctagttgatgaatgt
ggcaatatggggatagatttactgcctcctgatgttaatgccggtcaatataaatttacc
gttaacgagcaagatcaaattgtctacggtattggcgcagtaaaaggcgtgggtgaaggt
cctattgatgccattattgccgcacgcgaagctggcggtgaatttaccgatctttttgat
ttttgcgcgcgactcgatctgaaaaaaattaataaacgtgttttagaaaaattagttaaa
gcgggggccatggacagtttagggcctaaaaaaattatcaacggtaaagaagtaccacat
cgtgctgttttatttgaaacattacctgaagcaataaaggctgcagaccaatatgcaaaa
gcacaggcagttggacagaatgatttatttggcttaattaatgaagcgtcagcagagccg
cgacaagcctttaaagatgtgccgatgtgggctgaagaagtttggcttaatgcagagaaa
gaaacgttaggtttatatttaacgggtcatcccattaatcgtttcttaagtgaaataaag
cattatgcgactggacgcttagtcagtctgcaaccgaccagtaaagacaaaaccacagtt
gcggttggtctagtgttaggtgttagagttatggtcaataagcgcggcagacgatgggcc
ttagttacgcttgacgataaaagtgctcgcatggacattagactctttcccgatgactat
gataattttgctgaattgctggtaagtgacgctattttggtctgtagtggacaggtcagc
tttgatgaatactccggaggcattacaatgaccgctcgagatatcatgacggttggtgat
gctcgtgaaaactatgtctcttcagtagatatcaatgtcaataaaaacaaggcaggcgca
ggttttattgataaatttaccgaggtattaacaccttataaggatggtacgtgtcctgtt
cggttgttttatcaaagagatgaagcaaaagctatgctagaattaggcgtacaatggcgc
gttacgcctgcagaccctttattacatgaattaagaaccttgttaggtgatggcgacgtt
actttaaggtttaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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