KEGG   Colwellia sp. PAMC 20917: A3Q34_11790
Entry
A3Q34_11790       CDS       T04511                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
coz  Colwellia sp. PAMC 20917
Pathway
coz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:coz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3Q34_11790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:coz03019]
    A3Q34_11790
   03016 Transfer RNA biogenesis [BR:coz03016]
    A3Q34_11790
Enzymes [BR:coz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A3Q34_11790
Messenger RNA biogenesis [BR:coz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A3Q34_11790
Transfer RNA biogenesis [BR:coz03016]
 Prokaryotic type
  tRNA degradation factors
   A3Q34_11790
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12
Other DBs
NCBI-ProteinID: AOW77478
UniProt: A0A1D8RWK1
Position
2738719..2741172
AA seq 817 aa
MNRVYPLKDPHQKREAQKYDNPVASRELLLSVIENSAVPLNFKAICKALNYHDETHHVGV
KRRLRAMENAGQLVFNKLKQYVIPAKNSLITGKVTGHRDGFGFFIPDIAKGEKPGKDFYI
SSHEMQRVFHGDIVSAILVDRTDRKGRQEIKIIEVIEPRKAGIVGRFYVEHGIAYIVPDD
ARIKQDILIEPESKLGARHGQMVVVNVLHRPSKRNNAVGEVIEVLGDHLAPGMEIDIALR
EHDLPHEWSASVIEEVATIADEVEDEAKISRVDLRDLPLVTIDGEDARDFDDAVYCQPEE
SGGWRLWVAIADVSYYVRNGTALDDEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVD
RLCMVCEMTISASGELSGSKFYSAVMRSHARFTYSKVAAILSGEDATEKAALREQYQPLV
GDLENLYQMYLALKTSRTNRGAIAFETSESLFLFNSDRKIESIVPLIRNDAHKIIEECMV
LANVATAKFVEKHQMPGLFRVHDKPSEDKYKNFVSYLTELGISLPTREQPEPADYANILN
HVQGRPDQELIQTMLLRSMRQAVYQSENLGHFGLALESYSHFTSPIRRYPDLVIHRVIKA
ILAKQAQSANESNEANAGFYQYSPEEVIELGEHCSMTERRADDATRDVADWLKCEFMQDH
VGDTFTGVISTVTNFGLFVRLTDLHIEGLIHITSLGHDYYHFDDVRMCLSGERSGTKYRI
GDVLEVNVAAVNLDEKKIDLVLSGEQAPKSSGKPEGKSKAKSTGLRKNADQGFNRPKGTS
DKGAPKKPKDKKTEKSKAKKRTARKKRPGKNARKTAE
NT seq 2454 nt   +upstreamnt  +downstreamnt
attaatcgagtttatcccctgaaagatcctcatcaaaaacgcgaagcacaaaaatacgac
aatccagtggcgagtcgagaattactattatcagtaatagaaaactctgctgtgccactt
aattttaaagcgatatgcaaagctttgaattatcatgatgaaacgcatcatgttggcgta
aaacgacgtttgcgtgctatggaaaatgcaggtcagcttgtttttaataaacttaagcaa
tatgtcattcctgccaaaaatagtttgatcacgggtaaagttaccggtcatcgtgatggt
tttggcttttttatacctgacattgctaaaggtgagaagccaggcaaagatttttatatt
tcatctcacgaaatgcaacgggtattccatggtgatattgttagcgctattttagtggat
cgtaccgatcgcaaaggccgacaagaaattaaaataattgaagtcatcgaaccgcgtaaa
gccggtattgttggccgcttctatgttgaacatggtatcgcttatattgttccagacgat
gcgcgtattaaacaagatattctgattgaacccgaaagcaagcttggtgcacgtcacgga
caaatggtggtggtcaatgttttgcatcgtccatcaaaacgcaataatgccgtaggtgaa
gtgattgaagtcttaggtgatcatttagcaccaggcatggaaattgacattgctctacgt
gagcatgacttaccacacgaatggtcggctagcgttattgaagaagttgcaacaatagca
gacgaagtcgaagacgaagcaaaaatttcacgagttgacttacgtgacttaccgctagtc
actatagatggcgaagacgctagagattttgatgatgctgtttactgtcagcctgaagaa
tcgggtggctggcgtttatgggtggctatagccgacgtaagttactacgtacgtaatggt
acagcgcttgatgatgaagctatatctcgtggtaattcggtctattttccgagccaagtt
attcctatgttaccggaaaaactatctaacggcttatgttcattaaaccctgatgttgac
cgtttatgtatggtttgtgaaatgactatcagtgcgtcaggtgagttgtcgggtagtaag
ttctactcagcggttatgcgctcacatgctcgctttacttatagcaaagtcgcagcaatt
ctatcgggtgaagacgcaaccgaaaaggcagcgttgcgcgaacaatatcagccattagtc
ggcgatttagaaaatttatatcaaatgtatttagcattaaagacctcgcgaactaatcgt
ggtgccattgcttttgaaacctccgagtctctatttttgtttaatagtgatcgtaaaata
gaatcgattgtgccgcttattcgtaacgatgcgcataaaatcattgaagaatgtatggtt
ttagcgaatgtggcaacggcaaaatttgtagaaaaacaccaaatgcccggtttattccgt
gtccatgacaaaccgagtgaagataagtataaaaactttgtcagttatttaactgaactc
ggcatatccttgccaacgcgagagcaacctgaacctgctgattacgctaatattttaaac
catgttcaaggtcgtccagatcaagagttgatccaaaccatgttgctgcgctctatgcgc
caagccgtttatcaaagtgaaaatttaggacattttggtttagcgctcgagtcttatagt
catttcacttcgccaattcgtcgttatccagatttggtcattcatcgagtgattaaagcg
attctggcaaaacaagcacaaagcgctaacgaaagtaatgaagctaacgccggattttac
caatattcacctgaagaagttattgaactaggagagcattgttcaatgaccgaacgtcgg
gctgatgatgcgactcgtgatgttgctgattggttgaaatgtgaatttatgcaagatcac
gttggtgatacttttaccggtgttatttcaaccgtgactaattttggtctatttgtacgc
ttaaccgatttacatattgaaggcttaattcatataacttctttagggcatgactattat
cactttgatgatgttcgcatgtgtttgagtggtgaacgttcgggcactaaatatcgtatt
ggcgatgtcttagaagttaatgttgccgcagtaaacttggatgagaaaaaaatagatctc
gttttgtcgggtgaacaagcgcccaaaagtagtggtaaacctgaaggtaaatcgaaagct
aaaagtacagggctgagaaaaaacgccgatcagggctttaataggcccaagggaactagc
gacaaaggggcgcctaaaaagccaaaagacaagaaaacagaaaaatcaaaagctaaaaag
cgtaccgcacgaaaaaaacgtccaggtaaaaatgctcgtaaaacggctgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system