KEGG   Chlamydia pneumoniae AR39: CP_0121
Entry
CP_0121           CDS       T00029                                 
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
cpa  Chlamydia pneumoniae AR39
Pathway
cpa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CP_0121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpa03021]
    CP_0121
   03400 DNA repair and recombination proteins [BR:cpa03400]
    CP_0121
Enzymes [BR:cpa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CP_0121
Transcription machinery [BR:cpa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CP_0121
DNA repair and recombination proteins [BR:cpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CP_0121
SSDB
Motif
Pfam: RNA_pol_A_CTD RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-ProteinID: AAF38004
UniProt: Q9Z7S8
Position
121918..123093
AA seq 391 aa
MPAKKKAQSVVLGKEKGMSDNAHNLLYDKFELPEAVKMLPVEGLPIDKHARFIAEPLERG
MGHTLGNALRRALLIGLEAPAIISFAMTGVLHEYMAIEGVIEDVTNIILNLKGALLKKYP
MQDSSLGRTTQVLKASISIDASDLAAANGQKEVTLQDLLQEGDFEAVNPDQVIFTVTQPI
QLEVVLRIAFGRGYTPSERIVLEDKGVYEIVLDAAFSPVTLVNYFVEDTRVGQDTDFDRL
VLIVETDGRVTPKEALAFSTQILTKHFSIFENMDEKKIVFEEAISIEKENKDDILHKLIL
GINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNFGKKSLCEIKNKLKEMKLELG
MDLTQFGVGLDNVKEKMKWYAEKIRAKNIKG
NT seq 1176 nt   +upstreamnt  +downstreamnt
ttgccggccaagaaaaaggcgcagagtgtagttttagggaaggagaaagggatgtcagat
aacgcacacaatttactttatgataagtttgaactgcctgaagcagttaaaatgttgcct
gttgaagggcttccaatagacaaacatgctcgcttcattgctgagcctctagaaagagga
atgggccacactttaggaaatgctctaagacgtgctttgcttattggtttagaagctcca
gctattatctcgtttgctatgacaggcgtacttcatgaatatatggcaatcgaaggggtt
attgaggatgtaactaacatcattctgaatttaaaaggtgccctattaaaaaagtacccc
atgcaggatagttctttaggaagaaccactcaggtcttaaaagcttcaatttctatagat
gcttccgatttagccgcagctaatggacaaaaagaagtgactctacaagatctattgcaa
gaaggggactttgaagccgttaacccagatcaagtcatttttactgttactcaacccata
cagttggaagtcgttctacgaattgcttttggtaggggatatacaccttctgaaaggatt
gttttggaagataagggtgtttatgaaatcgttttggatgcagccttttctccagtcact
ttagtcaactactttgtagaagatacacgggtgggtcaggatacagattttgaccgttta
gttttaatagttgaaacagatggaagagtgactccgaaagaagctctggctttttcaact
caaattttgactaaacatttttccatttttgaaaatatggatgagaagaaaatcgtattt
gaagaagctatttctattgagaaagaaaacaaagatgatattcttcataagttaatttta
ggaattaatgaaatagaactctcagtcagatcaacaaattgtttgtctaatgcaaatatt
gagactattggcgaacttgttattatgcctgaacctcgattgctacaattcagaaatttt
ggaaagaaatcactgtgtgagatcaagaataaattgaaagaaatgaagcttgaattagga
atggacctaacgcaatttggcgtaggtttagataacgtaaaagaaaaaatgaagtggtat
gccgaaaagattcgggctaaaaatataaagggatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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