KEGG   Carica papaya (papaya): 110811150
Entry
110811150         CDS       T05151                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110811150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpap03041]
    110811150
Enzymes [BR:cpap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110811150
Spliceosome [BR:cpap03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110811150
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110811150
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 PWI nSTAND3 AAA_30 T2SSE AAA_23 ABC_tran SRP54 AAA_16 Flavi_DEAD
Other DBs
NCBI-GeneID: 110811150
NCBI-ProteinID: XP_021893248
Position
Unknown
AA seq 939 aa
MGSNSNLQTWVSDKLISLLGYSQATVVQYVIGLAKRATSPADILGELENLGLSSSSDTRA
FAEEIFSRVPHRTAGVNLYLQREIEAATLARKQKTYTLLDAARTRKLTEPKLSQKEEEEA
IRRAKALEHDDLESLRKVSRQEYLKKREQKKLEEIKDEIEDEQYLFEGVKLTEAEYREFR
YKKEIYELVKKRSEEAENANEVIMPYKKKGKINVPFIYLFISFRDTSVSDKMNPFAEQEA
WEEHQIGKATLKFGSKNKRPTSDDYQFVFEDQIEFIKASVMDGDNFEDVLPTESPDGSRV
KSALEKLKEERKTLPIYPYRDELLQAVEDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRG
KVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLRELL
GEPDLASYSVIMVDEAHERTLSTDILFGLVKDITRFRPDLKLLISSATLDAEKFSDYFDS
APIFKIPGRRFPVDIHYTKAPEADYLDGDVLIFFTGQEEIEAAEEIMKHRTRGLGTKIAE
LIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYN
PRTGMESLLVTPILKASANQRAGRSGRTGPGKCFRLYTAYNYHNDLEDNTVPEIQRTNLA
NVVLSLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLD
PMLSKMIVASDKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIA
LLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNPNDLEAIK
KVITSGFFPHSARLQKGGSYRTVKHPQTVHIHPTSGLAKALPRWVVYHELVLTTKEYMRQ
VTELKPEWLVEIAPHFYQLKDVEDSASKKLPKGEGRAAL
NT seq 2820 nt   +upstreamnt  +downstreamnt
atgggaagcaacagtaatctgcagacttgggtatctgacaaattaatctcattgctggga
tattcgcaggccacagttgttcaatatgttataggactagcgaagcgagcaacatcacct
gctgatattttgggtgagctagagaatctcggtttgtcttcatcaagtgatactcgagca
tttgctgaagagatattttctagagttccccatagaactgctggtgttaatctttaccta
caacgagaaattgaagctgcaacgttggcaaggaagcagaagacttatacacttcttgat
gctgctcggacacgaaaattaactgagcccaaactttcacagaaggaggaagaagaggct
attcggagagcaaaggctttggagcatgatgatcttgaatcgttaaggaaagtttcacga
caagaatatttgaagaagagggagcaaaagaaactggaggaaatcaaggatgagatagaa
gatgaacaatatctttttgaaggtgtaaagcttactgaagcagaatatcgtgaatttaga
tataagaaagaaatatatgagcttgtgaagaagaggtcagaagaggctgagaatgcaaat
gaggtaatcatgccttacaaaaaaaagggtaagataaatgtcccttttatttatttattt
atttcttttagggacacaagtgtatcagataaaatgaacccatttgcagaacaagaggct
tgggaggagcatcaaattggaaaggcaacattaaaatttgggtcgaaaaacaaaaggcca
acctccgatgactatcagtttgtgtttgaggaccagatagagtttatcaaggcatcagtg
atggatggcgacaattttgaagatgtcttgcccaccgaatcacctgacggttccagggtg
aaatcagcattggaaaaacttaaggaggagagaaaaacgttaccaatctacccataccga
gatgagcttcttcaagctgttgaagatcatcaggttcttgttattgtaggagaaactggt
tctgggaagaccacacagataccccaatatcttcatgaagctggttacacaaagcgtgga
aaggttggatgtacacagccacgaagagttgctgccatgagtgtcgctgcccgagtttct
caagaaatgggtgtcaaacttgggcatgaggttggttactctattcgttttgaagattgc
acttcagaaaagactgttttgaaatacatgactgatggaatgttgttgcgtgagttgctt
ggcgaacctgatctagctagctacagtgtgataatggtggatgaggcgcatgaaagaact
ttatcaactgacattctgtttgggttagtgaaggacataacccggtttcggcccgatctc
aaattgcttatctcaagtgcaacacttgacgcagagaaattcagtgactattttgattct
gctccaattttcaaaattccagggagaagatttcctgttgatatccattataccaaggca
cctgaagctgattacttagatggggatgttttgatttttttcactggtcaggaggaaatt
gaggcagcagaagaaattatgaaacacaggacaagaggtttgggaacaaaaattgcggaa
cttataatctgtccgatatatgcaaaccttccaactgaactccaggcgaaaatatttgaa
cctacaccagaaggtgcacgcaaagttgtccttgcgacaaatattgcagaaacatcttta
actattgatgggatcaaatatgtcattgatccagggttttgcaagatgaaatcatataat
ccaaggacaggaatggagtctttgctggtgactcccatcttgaaagcctctgccaatcag
cgtgctggtcgatctggacgaacgggtccaggaaagtgtttccgcttgtacacggcttat
aactatcacaatgatttggaagataatacagtgccagaaatacaacgaacaaaccttgca
aatgttgtgctttctctgaagagtcttggaatccacgacttgctaaactttgacttcatg
gatccaccacctgctgaagcactcctgaaagctttagaattgctctttgccttgagtgca
ctaaataaactgggagagttaacaaaagttggtagacgaatggcagagttccctcttgat
cctatgctatcaaagatgatagttgcttctgacaagtataagtgttctgatgagataatt
tcaattgctgctatgctttctattggaaattcaatcttttatcgtccaaaggacaagcaa
gtccatgctgataacgctagaatgaattttcacactgggaatgtgggtgatcatattgct
ttgctgaaggtttacaattcatggaaggaaacaaattattcaacccaatggtgctatgaa
aattatattcaggtgaggagcatgaaacgtgccagagatataagagaccagttggagggg
cttctggagagagttgaaattgaggtgacgtcgaatccaaatgatttagaggctataaag
aaggttataacatctggtttcttccctcattctgctaggctgcagaaaggtggatcttac
cgtacagtgaaacatccacagactgttcatatacatcccacctcaggactggccaaggct
ctcccaagatgggttgtgtaccatgaattggtcctcacaaccaaggaatatatgagacag
gtgactgaactaaagccagagtggctggtggaaatagctcctcacttctaccaattgaag
gatgttgaagactctgcgtcaaagaaattgccaaagggagaagggcgggcagcactataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (42)   

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