KEGG C.perfringens: CPE0725

Clostridium perfringens 13: CPE0725

Entry

CPE0725 CDS C.perfringens

Gene name nanI

Definition exo-alpha-sialidase

Orthology K01186 sialidase-1 [EC:3.2.1.18]

Pathway cpe00511 Other glycan degradation
cpe00600 Sphingolipid metabolism

Class Metabolism; Lipid Metabolism; Sphingolipid metabolism
[PATH:cpe00600]
Metabolism; Glycan Biosynthesis and Metabolism; Other glycan
degradation [PATH:cpe00511]
Environmental Information Processing; Signaling Molecules and
Interaction; Bacterial toxins

SSDB

Motif Pfam: Sialidase BNR CHB_HEX_C DUF2259

Other DBs NCBI-GI: 18309707
NCBI-GeneID: 988984
JCVI-Pathema: CPE0725
UniProt: Q8XMG4

Structure

PDB: 2VK5 2BF6 2VK6 2VK7

Position 900997..903081

AA seq 694 aa
MNYKGITLILTAAMVISGGNYVLVKGSTLDSGKNNSGYEIKVNNSESLSSLGEYKDINLE
SSNASNITYDLEKYKNLDEGTIVVRFNSKDSKIQSLLGISNSKTKNGYFNFYVTNSRVGF
ELRNQKNEGNTQSGTENLVHMYKDVALNDGDNTVALKIEKNKGYKLFLNGKIIKEVKDTN
TKFLNNIENLDSAFIGKTNRYGQSNEYNFKGNIGFMNIYNEPLGDDYLLSKTGETKAKEE
VLVEGAVKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTA
VRRSEDGGKTWDEGQIIMDYPDKSSVIDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGS
GFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDGNKTEYTTNALGDLFKNGTKIDNINSST
APLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRI
VVPVYYTNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTEC
QVVEMPNGQLKLFMRNLSGYLNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKID
GKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEFDWKYNKLVKPGYYAYSCLTE
LSNGNIGLLYEGTPSEEMSYIEMNLKYLESGANK

NT seq 2085 nt +upstreamnt +downstreamnt
atgaattacaaagggataactttaattttaacagctgctatggttataagtggtggtaat
tatgtattggttaaaggaagtactttagactcagggaaaaataatagtgggtatgagatt
aaagtaaataatagtgaaagtttaagttcactaggagaatataaggatataaatttagaa
agttcaaatgcttctaatattacttatgatttagaaaaatataaaaatttagatgaaggt
actattgttgtaagatttaattctaaagattctaaaatacaaagcttattaggaataagt
aatagcaaaactaaaaatggatattttaatttttatgttactaattcaagagttggtttt
gagcttagaaatcaaaaaaatgagggaaatacacaaagtggaactgaaaatctagtacat
atgtataaagacgttgctttaaatgatggtgataatactgttgccttaaagattgaaaaa
aacaaaggttataagcttttccttaatggaaaaatcataaaagaagttaaagatacaaat
acaaagtttttaaataatatagaaaatttagatagtgcttttattggaaaaactaataga
tatggacaatctaatgaatataattttaagggcaatataggttttatgaatatatataat
gaacctttaggcgatgattatttacttagtaagactggagagacaaaagctaaagaagaa
gttcttgtagagggagctgtaaagacagagccagttgatttatttcatccaggattttta
aattctagtaattacagaataccagccttatttaaaacaaaagaaggaactttaatagct
tcaatagatgcaagaagacatggtggggccgatgctcctaacaatgatatagatacagca
gttagaagaagtgaagatggagggaaaacttgggatgaaggacaaataataatggactat
cctgataaatcctctgttatagatacaactttaattcaagatgatgaaacaggaagaata
ttcttgttggtaactcatttcccttcaaaatatggtttttggaatgctggattaggaagt
ggatttaaaaatattgatggaaaagaatatttatgtctttacgattcatcaggtaaagaa
tttactgtaagagaaaatgtagtatatgacaaagatggcaataaaacagaatatacaaca
aatgctttaggagatttatttaaaaatggaactaagatagataatataaattctagtaca
gcacctttaaaagcaaaagggacaagctatataaatcttgtatatagtgatgatgatgga
aagacttggagtgagccacaaaatattaatttccaagttaaaaaggattggatgaagttt
ttaggaatagctccaggtagaggaatacaaataaaaaatggagaacataaaggaagaata
gtagttcctgtttactatacaaatgaaaaaggtaaacaatctagtgctgtaatatatagt
gatgatagtggtaagaattggacaataggagaatctccaaatgataatagaaaattagaa
aatggaaaaataataaattctaaaaccttatcagatgatgcacctcaattaactgaatgt
caagtagtagaaatgccaaatggtcaactaaaattatttatgagaaatttaagtggatat
ttaaatattgctacaagttttgatgggggagctacttgggacgagacagtagagaaagat
actaatgttttagagccatattgccaattaagtgttataaattatagtcaaaagatagat
ggaaaggatgctgttatcttctcaaatccaaacgcaagaagtagatcaaatggtactgtg
agaattggattgattaatcaagttggaacatatgaaaatggtgaacctaaatatgaattt
gattggaaatataataaattagttaaaccagggtattatgcttattcttgtttaacagaa
ttaagcaatggaaatattggattattatatgagggtacaccaagtgaagaaatgtcttat
attgaaatgaatttaaaatatttagagagtggagctaataaataa

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-PATHEMA-CPE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (4)   
   PDB (4)   
Protein domain (4)   
   Pfam (4)   
All databases (21)

DBGET integrated database retrieval system