KEGG   Chlamydia pecorum PV3056/3: CPE1_0655
Entry
CPE1_0655         CDS       T02854                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cpeo  Chlamydia pecorum PV3056/3
Pathway
cpeo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpeo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CPE1_0655 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpeo03021]
    CPE1_0655 (rpoC)
   03400 DNA repair and recombination proteins [BR:cpeo03400]
    CPE1_0655 (rpoC)
Enzymes [BR:cpeo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CPE1_0655 (rpoC)
Transcription machinery [BR:cpeo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CPE1_0655 (rpoC)
DNA repair and recombination proteins [BR:cpeo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CPE1_0655 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl Mei5
Other DBs
NCBI-ProteinID: AGW38138
Position
complement(749656..753837)
AA seq 1393 aa
MFGENSRDISALVKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERVIYYEEYVVIDPGKTDLTKKQLLNDVQYREVVERWGKDAFV
AKMGGEAVYDLLKSEDLQSLLKELKERLRKTKSQQARMKLAKRLKIIEGFVSSSNNAEWM
VLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDLGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVAIPSKDMTLGLYYLMADPTYFPEDHGEKTKVFKDVTEV
LRALNNGGFLDETLENRRDETGRGIHIHEKIKVRIDGQIIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFAQATKAAISMGLKDVRIPEVKEE
VLKDAYSKVAIVRKQYEDGIITDGERHSKTISIWTEVSEQLSNALYVEISKQVHSKHNPL
FLMIDSGARGNRSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSAVRQGSEELLPLKDRIYGR
TLAEDIYQPGDKSRLLAQNGDVLTSAQAEAIDDFGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPELVASYDGVLVYTD
LRFVKGQDGNNLVLNKMGAVHIVRDEGRSLEEYKKLLSTKSIESLETFPVELGVKILVED
GESVSRGQKIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVTNKNTGLVELIVKQHRGE
LHPQIAIYSDQDFSELVGTYAIPSGAIISVEEGQQVDAGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGIVDFKGIQKNKRILVVRDESTGMEEEHLIPLTKHMIVQ
RGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQ
MLQKIRITDPGDTTFLFGEDVNKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFETHKRIKHYLEKEQED
LVFDFVSESECTC
NT seq 4182 nt   +upstreamnt  +downstreamnt
atgttcggagaaaattctcgagacatttcagccttagttaaggaagggctgtttgataaa
ttagaaataggtattgcttcagatattacaattcgagataagtggtcatgtggagagatt
aaaaagcccgaaacaataaattaccgtacatttaagcctgaaaagggtggtttgttctgt
gagaaaattttcggtcctacgaaggattgggaatgctgttgtgggaagtataagaagatt
aaacacaagggaattgtttgcgatcgctgtggtgtagaggttactctatctaaggttcgt
cgtgagcgtatggcgcatatcgaattagctgtgcccattgtgcatatttggtttttcaaa
accaccccctctagaattggtaatgttttgggaatgacagcttctgatctagagcgtgta
atctactacgaagaatatgtagttattgatccaggcaagacagatttgacaaaaaaacag
cttttaaatgatgtgcaatatcgtgaagttgttgagcgttggggtaaagatgcttttgtc
gccaaaatggggggagaagcagtttatgatcttttaaaatcagaagatctccagagttta
ctcaaagagctgaaggagcgtttacgtaaaactaaatcacagcaagcacgaatgaagctt
gcaaaacgtttgaagattattgaaggatttgtttcttcttctaataacgctgagtggatg
gttttaaaaaatattcctgtagttccacctgatcttcgtcctttagttcctttagatggg
ggacggtttgctacctcagatttaaatgatttgtatcgtcgtgtgattaatcgtaataat
cgtttaaaagcgattttacgtttaaaaactccagaagttatcgtgagaaatgaaaagcgt
atgctgcaagaagctgtagatgcgctgtttgataacggacgtcatgggcaccctgtaatg
ggagctggaaatcgtcctttaaaatctctttcagaaatgttgaaaggaaagaatgggcgt
tttcgtcaaaatcttttaggaaagcgtgtagactattccggacgttctgtaattattgtt
ggcccagagttaaagttcaaccaatgtggtcttcccaaggaaatggctttagagttattt
gagccatttattattaaacgactgaaagacttgggaagtgtgtatactattcgctctgcg
aagaaaatgattcaacgtggggctcctgaagtgtgggatgttttagaggagatcattaaa
gggcatcccgtacttttaaaccgagcgccgacacttcaccgtttgggaatccaagcattt
gagcctgtattgatcgaaggtaaagcaatccgagttcatcctttggtttgtgctgctttt
aacgcagactttgatggagaccagatggctgttcacgtgcctttatctatagaggcacag
ctagaggctaaagttttaatgatggctccagataatatttttcttccttcttctggaaag
cctgtagcgattccttctaaggacatgactttagggttgtattaccttatggcagatcct
acgtatttccctgaggatcacggtgagaaaacgaaggtctttaaagatgtaacagaggtt
ctaagagcgctaaataacggtggatttttagacgaaactttagaaaatcgtcgtgatgaa
acaggacgagggattcatatccatgaaaagataaaagtccgtattgatggccagattatt
gaaaccaccccaggaagggtgttgtttaataggatcgttcctaaagagttaggattccaa
aattatagtatgccaagcaaacggatcagtgagctgattttgcagtgttataaaaaagtt
ggtcttgaagctacggtgcgtttcctagatgacttgaaggatcttggctttgctcaagca
acaaaagctgcgatttctatgggattgaaagatgttagaatcccagaagttaaagaagaa
gtgctcaaggatgcatatagtaaggttgctattgttagaaagcagtatgaagatgggatt
attacagatggagagcgtcattctaaaacgattagtatttggactgaggtttcagaacag
ctttctaacgcgctttacgtagaaatcagtaagcaagttcatagtaagcataatcctttg
ttcttaatgattgactctggagctagaggaaaccgttctcagctgaagcagttgggggca
ttacggggattgatggcgaagccgaacggagcaattattgaatctccgattacttcgaat
ttccgagaaggattgactgttttagagtattcgatttcatctcacggagcgcgtaaaggt
ttagccgatacagcgttgaaaactgcggattctgggtatctaacgcgaaggcttgttgat
gttgctcaggatgttatcattacggaaagagactgcggaacattgaaccatattgaggta
tctgctgttcgtcagggatctgaagagcttttgcctttgaaagaccgtatttatggccgt
actctggctgaagacatctatcaaccaggagataaaagtaggctattggctcaaaatggc
gatgtgctaacttctgcacaggctgaggctattgacgactttggaattgaatcgataaaa
attcgctctacattaacttgtgaaagtcgtcgtggtgtatgtgcgaaatgttatggcttg
aatctggctaatggtagacttattggcttaggagaggctgtaggaattattgctgcacaa
tctattggggagcctggaacgcagttaacaatgagaacgtttcaccttggaggtattgct
gcaacatcttcaactcctgagctcgttgctagctatgatggggtattggtttatactgac
ctaagatttgttaaaggacaggatggaaataatttagtcctgaataagatgggggcagtg
catattgtccgcgatgagggccgtagtcttgaagaatacaagaaacttttaagtacaaaa
tctatagaaagtttggaaactttccctgtagagcttggagtaaagattcttgtagaggat
ggagagagtgtatctcgagggcagaagatagcagaggttgagttacataacattcctatt
atctgcgataagccaggatttgtaaaatatgaagacttggttgaaggaatttctacagag
aaggtaacaaataaaaatactgggcttgtagaattgattgtgaagcagcatcgaggggag
ctacaccctcaaattgctatttatagtgatcaagatttttcagaacttgtaggaacttat
gctatcccttctggagctattatttctgtagaagaaggccagcaagttgatgctggaatg
cttttggctagactccctcgtggcgcgattaagacaaaagacattactggtggtttgcct
agagttgcagaattggtcgaagctcgtaaacctgaagatgctgcagacattgcaaaaatc
gatgggattgttgactttaagggaatccagaaaaataaacgtattcttgtagttcgggac
gagagtacaggcatggaagaagaacacttgattccgctaacaaagcacatgatagttcag
cgtggcgatagtgtgattaaaggacagcaacttactgatggcttagtagttcctcatgag
attctggaaatttgcggtgttcgcgagttgcaaaaatatctcgtgaatgaggttcaagag
gtatatcgtctgcagggtgtggatattaacgataagcacatagaaattatcgtgcgacaa
atgctacaaaagatccgtattaccgatccaggtgatacaacattcctttttggcgaagat
gttaataaaaaagagttttacgaagagaaccgccgtacagaagaagatggaggcaagcca
gcgcaggcagttcctgtgttgttaggaattactaaggcttcattaggaacagaatccttt
atttccgcagcctcattccaagatactacacgtgtattgacggatgccgcatgcagtagt
aagacagactatttattaggcttcaaggaaaatgtaattatggggcacatgattcctgga
ggtacgggatttgaaactcataagcgaataaaacactacttagagaaagaacaagaggat
ctcgtttttgattttgtcagcgaatctgaatgtacttgttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system