KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111795886
Entry
111795886         CDS       T05351                                 
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111795886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111795886
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111795886
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111795886
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 111795886
NCBI-ProteinID: XP_023534282
Position
LG05:complement(2258145..2259567)
AA seq 318 aa
MKNIELNTSTETSTSFPLHRLFLRHNPLTSPQSLLYNPLSVPRSSKPKMLIQHLSSPIHV
REVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN
LIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRA
HGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAF
FGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRDVYF
GKDGPEKHAGVLYGLEVY
NT seq 957 nt   +upstreamnt  +downstreamnt
atgaagaacattgaattgaacacttccactgaaacttccacctctttcccactacaccgt
ctttttcttcgccataaccccctcacctcacctcaatccctcctttataacccactttcg
gttccccgatcttccaagcccaaaatgttaatccagcatctctcttcccccatccatgtc
cgcgaggtctgggacttcaatctccaccacgaattccgtctcatcaaccgccttgttgat
cgctaccctttcatttccatggacactgagtttcccggcgtcgtcgtccgccctgccttc
cacccatctcgcccctccgatcattaccttctcctcaagtccaacgtcgacgctctcaac
ctaatccaagtcggtctcaccctctccgacgccgacggcaaccttcctactctcggtacc
gacaagagattcatttgggagttcaatttcagggattttgacgttacccgtgacctccac
gcgcctgattccatcgacctcttgaaacgccagggcatcgacttcgaacgcaacagagct
cacggggttgactcggcacgattctccgagttgctcatgtcatccggtctgctctgtaat
ccctctgtcagttgggtcaccttccatagtgcctatgactttggctacttggtcaagatc
ctcactcgccggaagcttcctagccgcctcgacgagttcttgaagattctcaaggctttc
tttgggaacaaggtttatgatgtcaagcacatgatgcggttctgtgatagcctctacggc
gggttggagcgtgtggctaagactctagcggtggacagggcggtgggaaagtgccaccag
gctggttctgatagcctgctaacatggcatgcctttcagaagatgagggatgtgtacttt
ggaaaggatgggccggagaagcacgccggcgttttgtacggattagaagtatattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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