KEGG T05351: 111800379

Cucurbita pepo subsp. pepo (vegetable marrow): 111800379

Entry

111800379         CDS       T05351

Name

(RefSeq) carbon catabolite repressor protein 4 homolog 1-like

K12603

CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]

Organism

cpep Cucurbita pepo subsp. pepo (vegetable marrow)

Pathway

cpep03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cpep00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111800379
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111800379
Enzymes [BR:cpep01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     111800379
Messenger RNA biogenesis [BR:cpep03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111800379
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111800379

SSDB

Motif

Pfam:

Exo_endo_phos zf-C6H2 MINAR1_C

Other DBs

NCBI-GeneID:

111800379

NCBI-ProteinID:

XP_023539808

Position

LG08:7272740..7279230

AA seq 601 aa
MLNVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAALGGQFLRYRWYRLQSDK
KVAVCSVHPSEQATLQCLGCVKAKIPAFKSYHCTTKCFSDSWQHHRVLHDRAASAMNENS
NEEEELFGRHNNNNNAAPGAINPSSSSMLNGSTTLYPAAVTQKTGVETWLEVGRCKSYTP
TAEDIGHVLKFECAVVDVETMLSVASPLTVSTSRVIPAPSPTPRHLIPVNGVDTMGKMDL
DGRVSSSGTFTVLSYNILADVYATSETFSYCPSWALSWPYRRQNLLREIVGYRADIICLQ
EVQSDHFLEFFAPELDKHGYQALYKRKTNEVYNGNIQTIDGCATFFRRDRFAHVKKYEVE
FNKAAQSLTDPATILTAQKRNALNRLIKDDVALIVVLESKFSTPTVDNPGKRQLVCVANT
HINGNQDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSAPHHLLARGKVEPT
HPDLAVDSLNLCQPHSKLSHQLPLVSAYSYFAIKGVGNGSDKQKKRLDPTTNEPLFTNCT
RDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPIWSSDHTALLAEFRCKSRSR
R

NT seq 1806 nt +upstreamnt +downstreamnt
atgctgaacgtggtacgcgtgcacctgccctctgatattcctattgtaggttgcgaactc
acgccctacgtgctccatcgacggcctgataagaacattagcactgatgatgtttctgag
tccgctgcacttggcggtcaattcctgagatacagatggtatcgcttacaaagtgataaa
aaagttgctgtttgtagtgtacatccttctgagcaagccactttacaatgtttaggttgt
gttaaagccaaaattcctgcttttaaaagttatcattgcaccaccaaatgcttttccgat
tcttggcagcatcatcgtgttctacatgaccgtgctgctagtgctatgaatgaaaatagt
aatgaagaggaagagttatttggacgtcataacaataataataatgcagcacctggtgcc
atcaaccccagctcttctagcatgctcaatggttcaacaacattgtaccctgcagctgtt
acccaaaagactggtgtggaaacttggttagaggttggacgctgtaagagttacacacca
acggctgaagatattggccacgttcttaagtttgaatgtgccgtggttgatgtggaaacc
atgttatctgtggcatctccacttactgtctcaacttctcgggtcattccagctccatct
cctactccacgtcacttaatacctgttaatggggttgatacgatgggaaagatggatttg
gatggtcgagtatcatcatcaggaacttttacagtgctttcctacaatattttggctgat
gtttatgccacaagtgaaacattcagttattgcccttcatgggccctttcatggccatat
cggcgacaaaatttgcttcgggaaatagttggctatcgtgcagatataatttgtcttcag
gaggttcagagcgatcactttctggaattttttgctcctgaacttgacaaacatggttat
caagcactttacaagagaaaaaccaatgaggtctacaatgggaacattcaaacaattgat
ggctgtgcaacattttttcgtagagatagatttgctcatgtcaaaaaatatgaggttgag
ttcaacaaagctgcacaatctttgactgacccagctactattttaactgctcaaaagaga
aatgctttaaacagattaatcaaggatgatgttgcacttatcgtagttcttgaatcaaaa
ttcagcactccaacggttgataatccaggaaaaaggcagcttgtttgcgtggctaatacg
catattaatgggaatcaagatttaaaagatgtcaaactctggcaggtgcatactttattg
aaaggactggagaaaatagctgttagtgcagatattccaatgttggtctgtggggatttt
aattctgttcctggaagtgccccacatcatctccttgctagggggaaggtggaaccaaca
catccagatttagctgtagattctctaaatctatgtcagccacatagcaaattgtcacat
caactacctttggttagtgcatactcctactttgcaataaagggagttggtaacggttca
gataagcagaagaaaaggctggatcctacaacaaatgaacccttatttacgaattgtact
agagattttattggaaccctggactacattttctacacagcggacactttaacagtggag
tctttgttagagctcctggatgaggagagcttaaggaaagatacagcacttccatcccca
atatggtcctccgatcacacagcactccttgccgagtttcggtgcaaatctcgatctaga
cgttaa

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