KEGG   Corynebacterium phocae: CPHO_06515
Entry
CPHO_06515        CDS       T05007                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
cpho  Corynebacterium phocae
Pathway
cpho03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cpho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CPHO_06515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpho03400]
    CPHO_06515
DNA repair and recombination proteins [BR:cpho03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CPHO_06515
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CPHO_06515
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII DEAD UVR AAA_22 AAA_16 DUF87 Helicase_RecD AAA_5 HEM4 nSTAND3 UvrD-helicase AIG1 DUF6716 AAA_30 AAA_7 UB2H Ish1
Other DBs
NCBI-ProteinID: APT92604
UniProt: A0A1L7D3A2
Position
complement(1472296..1474395)
AA seq 699 aa
MAFAAEHPILPESEHRPVGEIERSARKFEVISEFQPSGDQPVAIKELDKRLNRGERDVVL
LGATGTGKSATAAWLIEKQQRPTLVMAPNKTLAAQLANELRELLPNNAVEYFVSYYDYYQ
PEAYIAQTDTYIEKDSSINEDVERLRHSATSALLSRRDVVVVSSVSCIYGLGTPQSYLDR
SVILSVGEEVERDRFLRLLVDIQYERNDIGFTRGAFRVKGDTVDIIPAYEERAVRIEFFG
DEIDELYYIHPLTGDVLERVEQVRIFPATHYVAGPERMEKAVADIKEELAERLADLENRG
KLLEAQRLRMRTEYDLEMIEQVGFCSGIENYSRHIDGRPAGTAPATLLDYFPQDFLTIID
ESHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSALDNRPLTFDEFEERVGQAVYMSATPGN
FEMAASGGEYVEQVIRPTGLVDPKVTVKPTKGQIDDLIDEVRQRTAKQERILVTTLTKRM
AEDLTDYLLEHGIKVRYLHSDIDTLQRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLV
AILDADKEGFLRSTTSLIQTIGRAARNVSGEVIMYADKITDSMAQAIEETERRREKQIAY
NKEHGVDPQPLRKKIADILDQVYESEAESEGADASDPASIVEKHDLSSMAVGEVQKLIDD
LTAQMRAAAKELKFELAGRLRDEVMELKKELRGLKDAGI
NT seq 2100 nt   +upstreamnt  +downstreamnt
atggcttttgctgcggaacaccccatccttccagaatccgaacaccgccccgtaggggag
atcgaaagatctgcgcgtaaattcgaggtgatctcggaattccagccctctggtgaccag
ccggtggccatcaaggaacttgataaaaggctgaacagaggcgagcgtgacgtggtcctc
ctgggcgccaccggtaccggtaagtctgccactgcggcctggttgattgaaaagcagcag
cgtccaaccctggttatggcaccaaacaagaccttggcagcgcagctggctaacgagctc
cgcgagctgttgcccaataacgcggtggaatactttgtgtcctactacgactactaccaa
ccggaggcctacatcgcgcagacggatacctacattgaaaaggactcgtccatcaacgag
gacgtagagcggctgcggcactccgccacatcagcactgctgtcgcgccgcgacgtggta
gtggtctcctccgtgtcctgcatctacggcttgggaacgccgcagtcctacctggaccgc
tccgtcattttgtccgtgggggaggaagtggagcgcgaccgctttttgcgcctgctggtg
gatatccagtacgagcgcaacgatatcgggttcacgcgcggtgccttccgcgttaaagga
gacaccgtggatatcatcccagcgtacgaggaacgcgcggtgcgcattgagttcttcgga
gacgaaattgatgagctttactacatccaccccctgaccggagacgtgttggagcgcgtc
gagcaggtgcggatcttcccggccacgcactacgtagccggccctgagcggatggaaaag
gcggtggccgacatcaaagaagaacttgcggagcgcttagccgacctggaaaaccggggc
aagctgctggaggcacagcgtctgcgcatgcgcaccgaatatgatctggagatgattgag
caagtaggtttttgctccggtattgaaaactactcccggcacattgacggccgcccggcc
ggcacggcaccggctaccctcctggactacttcccgcaggacttcctcaccatcattgat
gagtctcacgtgaccgtcccgcagataggtggaatgtttgaaggggatatgtcccgcaag
cgcaacctggtggaattcggattccgcttaccgtccgctttggataaccggcccctgacc
ttcgacgagttcgaagaacgcgtgggtcaagccgtgtacatgtccgctactcccggcaat
tttgagatggcagcctccgggggagagtacgtggagcaggtcatccgccccaccggcctg
gttgatcccaaggtcacggtgaaacccaccaaggggcagatagacgaccttattgatgaa
gtacgccagcgcaccgccaaacaagagcgcatcctggtcaccaccctgaccaagcgaatg
gccgaagacctcacggactacctcctagaacacgggatcaaagtccggtatttgcactcc
gatattgacacgctgcagcgcgtggagctgctccgccagctgcgcctgggcgaatacgac
gtgttggtgggaatcaacctgctgcgcgagggattggaccttccggaagtttccttggtg
gccatcttggacgcggacaaggaagggttcttgcgttcaaccacctcgctcatccagacc
atcggacgcgctgcacgtaacgtctccggtgaggtcatcatgtacgccgacaaaatcacc
gactccatggcgcaggctattgaggaaaccgagcgccgccgcgaaaagcagattgcctac
aacaaggaacacggcgtagatccgcaaccgctgcgcaagaagattgcagacatcctagac
caggtatacgagtcggaggcggaatccgaaggtgcggacgcgtccgatcccgcgtcaatt
gtggaaaagcatgacctttcctccatggcagtcggtgaggttcaaaaactgatagatgac
ctcaccgcccaaatgcgggcggctgccaaggagctgaagttcgagctagccgggcggtta
cgcgatgaggtgatggagctgaaaaaagagctgcgcgggcttaaagacgccgggatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (28)   

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