KEGG   Chitinophaga pinensis: Cpin_0542
Entry
Cpin_0542         CDS       T00959                                 
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
cpi  Chitinophaga pinensis
Pathway
cpi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cpin_0542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpi03400]
    Cpin_0542
DNA repair and recombination proteins [BR:cpi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cpin_0542
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Cpin_0542
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR AAA_16 AAA_22 DUF87
Other DBs
NCBI-ProteinID: ACU58040
UniProt: A0A979GSL4
Position
complement(644722..646776)
AA seq 684 aa
MPFKIQAPYAPAGDQPTAIRQLVEGIQDGAPAQTLLGVTGSGKTFTVANVIQQVQRPTLV
LTHNKTLVAQLYGEFRQFFPDNAVEYFVSYYDYYQPEAYMPVSDTYIEKDLSINEELDKL
RLRATTSLLSGRRDIIVVASVSCIYGMGNPTDYENGIIRLHKGQTIGRNTVLHGLVNSLY
SRTTGDFNRGNFRVQGDTVDINLPYVDFGYRITFFGDEIEEIESFDVQNGKRIGTMENAA
IFPANLYMAPKDMMAQITFEIQDELMAQVEYFRSIGKHLEAQRLSERVNYDLEMIRELGY
CSGIENYSRFLDRRAPGTRPFCLLDYFPKDFLLVIDESHVTIPQIGGMYGGDRSRKLTLV
DFGFRLPSAMDNRPLNFYEFENLVNQAIFVSATPGEYELRQTEGVVVEQVVRPTGLLEPP
IEIRPSVNQVDDLLDEIDKRVLKGGRVLVTTLTKRMAEEMDKYLHRINVKSRYIHSEVDT
LERIEILRDLRLGNIDVLVGVNLLREGLDLPEVTLVAILDADKEGFLRDERSLTQTAGRA
ARNAEGLVIFYADKITDSMQRTIDETDRRREKQVAYNTAHNITPRTVLKSKEQILGQTSV
LEIKQFDENSPYAVHDEVSLVAEDAMGYAKQEAVTAKTIPQMEKAISKVKKDMEKAAKDL
DFMEAARLRDQMFAMQRELESMKQ
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgcccttcaagatacaagcaccatacgcccctgcgggcgaccagccaacagcgatcaga
cagctggtggaaggtattcaggatggagcccccgcccagacattgctgggggtaacaggt
tccggtaaaacattcacagttgccaatgttatccagcaggtacagcgcccgacactggtc
ctgacgcataacaaaacactggtagcccagttatacggagaattcaggcagttcttcccg
gataatgccgtggagtacttcgtgtcttactatgactactaccagccggaggcttacatg
cctgtgagtgatacctatatagaaaaagacctctctattaacgaggaactggataagtta
cggctccgggctactaccagtctgttatccggccgtagggacattatcgtagtagcaagt
gtgtcctgtatctatggtatggggaacccgacagattacgaaaatggtatcatccgcctg
cataaaggccagaccattggccgtaataccgtgttacacggactggttaactccctctat
tcccgtacgaccggtgattttaaccgtggtaatttccgggtacagggagatacggttgat
atcaatctgccctacgtggactttggataccgtattaccttcttcggagatgagatcgaa
gagatcgaaagcttcgacgtacagaacgggaaacgtatcggcacaatggaaaatgcagcg
atcttccctgccaatctctatatggcacctaaagatatgatggcccagatcacctttgag
atccaggatgaactgatggcccaggtagagtatttccgctctatcggcaaacacctggag
gcacagcggctgtctgaaagagtgaactatgacctggagatgatacgcgaactgggctat
tgcagtggtattgaaaactactcccgtttcctggacagacgtgcaccgggtacccgccca
ttctgcttgctggattatttcccgaaagacttcttattagtaatagatgagagccacgtc
accatcccccagattggtggtatgtatggtggtgacagatcccggaaactgaccctggta
gacttcggtttcaggttgccatccgcaatggataaccggccgctgaacttctatgaattt
gagaacctggtgaatcaggccatcttcgtcagtgctacaccaggtgaatatgaactgcga
cagactgaaggggtggtggtagaacaggttgtaagacctaccggattgctggaacctccc
atcgagataagaccgagtgttaaccaggtagacgacctgctggatgaaatagacaagcgc
gtattaaaaggaggccgtgtactggtaaccaccctgaccaagcgaatggcggaagagatg
gataaatacctgcaccgtattaatgtgaagtcccgctatattcactcagaggtcgatacg
ctggaacgtattgagatattaagagacctccgccttggtaatatagatgtactcgtcggt
gtgaacctcttacgtgaggggcttgacttaccggaagtaacgttggtggccatactggat
gcggataaagaaggcttcctgagagatgaacgttccctgacacagacagcaggacgtgcg
gcgagaaacgccgaaggacttgttatattctatgctgacaagattaccgacagtatgcag
cgtacgatagacgagacagaccgtcgccgggaaaaacaggttgcctataatacagctcat
aatattacaccacggaccgtactgaaaagtaaggaacagatcctcggacagacatctgtg
ctggaaatcaagcagttcgatgaaaattcgccttatgcggtacatgatgaggtaagtcta
gtagcagaagatgcgatgggttatgcgaaacaggaagcggtaacggctaaaacgatccct
cagatggagaaggccatcagtaaggtaaagaaggatatggagaaggctgcgaaggattta
gacttcatggaagcggcccgtttacgcgatcagatgtttgctatgcaacgggaattagaa
agtatgaagcaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (32)   

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