KEGG   Chrysemys picta (western painted turtle): 101944666
Entry
101944666         CDS       T04662                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic04510  Focal adhesion
cpic04512  ECM-receptor interaction
cpic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101944666 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101944666 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101944666 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpic04147]
    101944666 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:cpic00536]
    101944666 (COL4A1)
Exosome [BR:cpic04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   101944666 (COL4A1)
Glycosaminoglycan binding proteins [BR:cpic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101944666 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 101944666
NCBI-ProteinID: XP_008164968
Position
Unknown
AA seq 1669 aa
MRLWRGVGLVLAALLLSEEPGEVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGLIGFPGM
QGPEGPPGPPGIKGDTGEPGLPGTKGTRGPPGVSGYPGNPGLPGIPGQDGPPGPPGIPGC
NGTKGEIGPVGPPGLPGLVGLIGPPGSPGIKGDPGEVIGFLPSNVLKGEKGYPGLPGLPG
MQGLQGLQGPIGPPGISGVPGPPGPRGDPGEKGQMGLSFQGPKGDKGEQGELGTPGPASY
DSKKEYILINGTTGEKGEKGDIGIKGDPGSCFKGEKGEPGKSGPRGKPGKDGEQGPKGNT
GEDGGFGVPGLPGDPGPKGDKGTQGLPGLPGRVISTLETYGEKGDIGPPGFPGLKGEQGE
KGLPGVPGYPGPPGLPSPGITGPPGFPGERGEKGDRGPPGRSLPGSTGRDGFPGPQGFPG
PPGPPGISNGITECQHGEPGDRGLPGPQGQPGFLGERGDKGDKGDGCAFCDVSGLPGHPG
PQGPPGPPGFPGQPGAKGDRGVPGLKGLEGVPGSPGVRGLIGSPGAKGEPGDIYFDSNIK
GDKGDPGFPGQPGVPGREGRPGRDGLPGVQGPKGASGTIGLKGERGPPGSSGFPGVRGER
GQPGLPGVGPAGPAGDKGDKGFPGNPGGPGRPGPKGEAGQVIPLPGPPGSDGLPGPPGFS
GVQGDRGDPGIPGKPGFPGEKGAIGQPGIGFPGPPGPKGFPGQPGTSGQPGAQGRPGFDG
LPGTPGLPGQKGDPGVGLPGPKGLPGPQGPAGFPGEKGNAGLPGLRGEQGFPGVPGQPGI
RGDPGSAGLPGSQGPPGVAGIGPPGPPGPAGGPGPQGPKGFPGTKGERGYPGIPGLDMPG
PKGDKGSSGQSGLPGLVGLPGAPGPQGKGGLPGFPGIKGEMGVMGTPGIPGAPGPLGNPG
LPGEKGTSGFPGTPGPRGDTGFKGSKGEVGLPGKPGTITVTDMENMKGQKGDPGEKGQEG
PIGEKGKTGDYGVAGMPGKDGEPGFPGLPGRKGDQGPPGYPGDPGFPGQKGSIGEMGLPG
TPGEKGVPGVPGSQGIPGYPGLQGAKGDKGESGIPGVGIPGSPGEKGEQGRPGVPGFPGE
KGEKGSAGIAGMPGHPGPKGLPGIAGYPGSPGSQGEKGEKGLSGLDGIPGLKGEPGEPGS
QGSSGVPGQKGEQGYDGIPGSPGAKGDPGIPGRGLPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGSKGEAGFVGPQGPPGQQGTPGLPGRSMEGPKGNRGPPGQPGLSGLPGPMGPPGSPG
LEGAKGEKGNTGWPGPPGRLGIKGDPGFQGIPGTDGLPGNIGQKGDMGPPGVPGFQGPKG
SSGFPGLKGEQGDQGFPGSKGLQGPPGPPGAYQLHKGEPGLPGPVGPVGPKGFPGLPGPK
GQQGVTGPEGIPGQPGNPGFDGQPGQKGEPGPSGPPGPRGARGPQGPEGLPGAMGPPGTP
SVAHGFLVTRHSQTIEEPECPSGTKLMYYGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTVQIPLCPEGWMSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRRT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgaggctgtggcgaggcgtggggctggtgctggctgcgcttctgctgagcgaggagccc
ggcgaggtgtccgccgcgggttgttctggctgtggaaaatgtgactgcagtggagtaaaa
gggcaaaaaggtgaaagaggtttgcctggtctacaaggtttaattgggtttcctggaatg
caaggacccgaaggtccccctgggccaccaggaattaagggtgatactggagaaccaggg
ctcccaggaacaaaaggaacaaggggcccaccaggtgtatcaggatatccaggaaaccca
ggtcttcctggcatccctggacaagatggcccaccaggtccacctggtatcccaggttgc
aatggcacaaagggtgaaataggtcctgttggtcctccaggtttacctggattggttggg
ttaataggacctccaggatctcctggaattaagggagacccaggtgaagtgattgggttt
ttaccatcaaatgtgctaaaaggtgaaaaaggttatcctggcctccctgggctaccaggt
atgcaaggattgcaagggctccaaggccccatcgggccaccagggatttcaggagttcca
ggtcccccaggcccacggggtgatccgggtgagaagggtcagatgggcttgagttttcaa
ggaccaaaaggtgataagggtgaacaaggagagctgggcacaccaggacctgcctcatat
gacagcaagaaagagtacattctcataaatggaacgacgggtgaaaaaggtgaaaaaggt
gatatagggattaaaggagatccaggctcatgtttcaaaggggaaaaaggtgaacctggg
aaatctggcccacgaggaaaacctggaaaagatggcgagcaaggaccaaaaggaaacact
ggtgaggatggtgggtttggagttccaggactaccaggtgaccctggtcctaagggagac
aagggcacacaaggtcttccaggacttccaggaagagtaataagtacactggaaacttat
ggtgaaaaaggagacattggtcctccaggttttccaggattaaaaggtgaacaaggtgaa
aaaggtttaccaggtgtaccaggatacccaggtcctccaggtttacctagcccagggatc
acaggtccacctggtttccctggtgagagaggtgaaaagggtgaccgaggtcctccagga
cgctctctgcctggatcaactggaagggatggttttccagggcctcaaggttttccaggt
cctccaggacctccaggcatatcaaatggaatcacggaatgtcagcatggagaacctggt
gatcgaggtcttcctggacctcaaggacaacctggattcttaggagagagaggagataaa
ggtgataaaggtgatggttgtgccttttgtgatgtatctgggcttcctggacatccaggg
ccacaaggtccaccaggtccaccaggctttccaggacagccaggagccaaaggagatagg
ggtgtgcctggactcaaaggtcttgaaggggttcctggttctccaggtgtgcgaggactg
attggtagcccaggagcaaagggagagcccggagacatttactttgattctaatataaaa
ggtgataaaggagatcctggattcccagggcaaccaggtgttcctggaagagaaggaagg
ccagggagagatggcctgccaggtgtccagggccctaaaggggcatcgggtacaattggg
ctgaaaggagaacgtggtccccctggctcaagtggatttcctggggtacgtggtgaaaga
ggccagcctggtcttccaggggtaggacctgctggaccagctggtgacaaaggagataaa
ggctttccaggaaacccaggtggaccaggccgtccagggccgaagggtgaagcaggacaa
gtcattcctctgcctggtcccccagggtcagatggtctcccagggccacctggcttctct
ggagtccaaggtgacaggggggatcctgggattccaggaaaacctggatttccaggagaa
aaaggtgctattgggcagccaggaataggattccctgggcctcctggccctaaaggtttc
ccaggtcagcctggcacatcaggtcagccaggggctcaagggcgtcctggctttgatggt
ttaccaggcacaccaggtttgcctggtcaaaaaggtgaccctggagtgggtctcccgggt
cctaaaggattaccaggcccacagggcccagctggcttccctggagaaaaaggaaatgct
ggtttgcctggcttacgaggagagcaaggatttccaggtgtacctggtcagccaggaatc
cgaggtgacccaggttcagctggattaccaggttcacaaggtcccccaggtgtggcagga
ataggccctccagggccccccggacctgcaggaggaccagggccacagggaccaaaagga
tttcctggaacaaagggagagaggggctacccaggtatcccaggactagatatgccagga
ccaaaaggagataagggtagctctggccagagtgggctaccaggtctggtaggtttacct
ggtgcacctggtccacaaggaaaaggtggacttccaggctttccaggcatcaaaggagaa
atgggagttatgggaacccctggaatcccaggtgctcccgggccactaggaaatccagga
ttaccgggtgaaaaaggtacttcaggttttccaggtacgccagggccacgaggtgatact
ggtttcaaagggagtaaaggtgaagtaggtctaccaggaaaaccaggaaccataacggta
acggacatggaaaatatgaaaggccaaaagggagacccaggagaaaaaggacaagaagga
ccaataggagaaaagggaaaaacaggggattatggtgtagcaggaatgccagggaaggat
ggtgaacctggcttcccaggacttccaggacgaaaaggtgatcaaggccctccaggatac
ccaggtgacccaggatttccaggacaaaaagggtcaattggagaaatgggtttgccagga
acacctggagaaaaaggtgtaccaggtgtgccaggctcacaaggtataccagggtaccct
ggattacaaggtgcaaaaggagacaaaggagagtcgggtattccaggggttggcattcca
ggttctccgggtgagaagggagaacaaggaagaccaggtgttccaggcttccctggtgaa
aaaggtgaaaagggtagtgcaggaattgcaggaatgcctggtcatccaggtcccaaagga
ttacctggcattgcaggatatccaggcagcccaggtagccagggagaaaagggtgaaaaa
ggactctctggtttggatggcattccaggtttaaaaggagaaccaggtgagcctggttct
caaggttcctctggtgtccctggacagaaaggtgaacaaggttatgatggaattccaggt
tcgcctggagcaaagggtgatccaggtattccaggtagagggcttccaggatttcctggt
gcaaaaggagataaaggtgcaaaaggcgatgtgggttttccaggatccccaggaagcccg
gggattcctggctcaaaaggagaagcaggatttgttggtccacaaggtcctccaggccaa
cagggcactcctggactaccagggagatcaatggaaggtcctaagggaaacagaggaccc
ccaggtcaacctggactttcaggtctaccaggtccaatgggaccaccaggatctccgggc
ctggaaggagccaaaggagaaaaaggaaacacgggttggcctggaccacctggaagactt
ggaatcaaaggtgatccgggattccaaggcattcctggtactgatggtttaccaggaaat
attggtcaaaagggtgatatgggacctccaggagttcccgggtttcaaggtccaaaagga
tcttctggcttcccaggtctcaagggagaacaaggtgaccaagggtttcctggctctaaa
ggtttacaaggtccaccaggtcctccaggtgcatatcagcttcataaaggggaaccaggt
ttacctggacctgtcggaccagttggtccaaaagggttccctggacttccaggtccaaaa
ggacagcaaggagtgacaggacctgagggtatacccgggcaacctggtaatccaggattt
gatggtcaacctggtcagaaaggagaacctggtccttctggtcctccaggtccgcgagga
gccagaggtccacaaggccctgagggtttaccaggtgctatgggcccgccaggcacacca
tctgtcgctcatggcttccttgttaccagacacagccaaaccattgaagaaccagaatgt
ccatctggaactaaactgatgtactatggctactccttactttacgtacaaggcaatgaa
agggcacatggtcaggatttgggcacagcagggagctgtcttcgtaaatttagcactatg
ccattcttgttctgcaacatcaataatgtatgcaactttgcatcaaggaatgactattcc
tactggctgtctactcctgaacccatgccaatgagtatggcacctatcactggtgacaat
atcaggccattcatcagtagatgctctgtatgtgaggctcctgccatggtaattgcagtt
cacagccaaacagttcaaataccattgtgccctgaaggctggatgtcgctttggattggt
tactcctttgtaatgcataccagcgctggtgctgagggttccggacaagctctggcatct
ccaggttcctgtctagaggagttccgcagtgctcccttcatagaatgccatggtcgtgga
acttgtaactattatgcaaatgcttacagcttttggcttgccactatagagagaaatgag
atgttcaagaaacctactccttcaactctgaaagcaggggacttgcgctcaaacgttagc
cgttgtcaagtctgtatgagaagaacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (77)   

Download RDF
DBGET integrated database retrieval system