KEGG   Cavia porcellus (domestic guinea pig): 100713536
Entry
100713536         CDS       T07777                                 
Symbol
Alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Pathway
cpoc03013  Nucleocytoplasmic transport
cpoc03015  mRNA surveillance pathway
cpoc03040  Spliceosome
cpoc05014  Amyotrophic lateral sclerosis
cpoc05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100713536 (Alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100713536 (Alyref)
   03015 mRNA surveillance pathway
    100713536 (Alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100713536 (Alyref)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100713536 (Alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpoc03019]
    100713536 (Alyref)
   03041 Spliceosome [BR:cpoc03041]
    100713536 (Alyref)
Messenger RNA biogenesis [BR:cpoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100713536 (Alyref)
    TREX complex
     100713536 (Alyref)
Spliceosome [BR:cpoc03041]
 Complex C
  Other components
   EJC/TREX
    100713536 (Alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100713536 (Alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded RRM_5
Other DBs
NCBI-GeneID: 100713536
NCBI-ProteinID: XP_003464949
Ensembl: ENSCPOG00000013710
UniProt: A0A286XMT3
Position
Unknown
AA seq 256 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPMRNRPA
IAPGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDA
DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL
VTSQIETQRRPAQSVNRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNSKQQLSAE
ELDAQLDAYNARMDTS
NT seq 771 nt   +upstreamnt  +downstreamnt
atggccgacaaaatggatatgtctttggacgacatcattaagctgaaccggagccagcga
ggcggccgcggcgggggccgtggccgcggcagggccggttcccagggcggccgcggcggt
ggggcgcaggccgccgcgcgagtgaatcgaggcggcgggcccatgcggaatcggccggcc
atcgcccccggcgcggcgggcggcggcggcaggaaccggccggcgccctacagcaggcca
aagcaacttcccgacaagtggcaacatgaccttttcgacagtggctttgggggtggtgcc
ggcgtggagacgggtgggaagctgttggtgtcaaacctggacttcggagtatcagacgca
gatattcaggaactgttcgctgaatttggaacactgaaaaaggcagccgtgcactatgat
cgctctggccgaagtttaggaacagcagatgtacactttgaacggaaggcagacgccctg
aaagctatgaaacagtataatggtgtccctctggacggccgtcccatgaatatccagctt
gtcacgtcacagattgaaacacagcgaagacctgcacagagtgtaaacagaggtggcatg
actagaaaccgtggctccggaggtttcggtggtggtggcacccggagagggacccgtgga
ggtagccgaggaagaggcagaggcactggcaggaactcaaagcagcagctttctgcagag
gagctggatgcacagctggacgcctataatgcaaggatggacaccagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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