KEGG   Cavia porcellus (domestic guinea pig): 106025160
Entry
106025160         CDS       T07777                                 
Symbol
Hmgb1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Pathway
cpoc03410  Base excision repair
cpoc04140  Autophagy - animal
cpoc04217  Necroptosis
cpoc04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    106025160 (Hmgb1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    106025160 (Hmgb1)
  09143 Cell growth and death
   04217 Necroptosis
    106025160 (Hmgb1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    106025160 (Hmgb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpoc03036]
    106025160 (Hmgb1)
   03400 DNA repair and recombination proteins [BR:cpoc03400]
    106025160 (Hmgb1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpoc04147]
    106025160 (Hmgb1)
Chromosome and associated proteins [BR:cpoc03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    106025160 (Hmgb1)
DNA repair and recombination proteins [BR:cpoc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     106025160 (Hmgb1)
   MMR (mismatch excision repair)
    Other MMR factors
     106025160 (Hmgb1)
Exosome [BR:cpoc04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   106025160 (Hmgb1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box NOA36 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 106025160
NCBI-ProteinID: XP_012996635
Ensembl: ENSCPOG00000031835
UniProt: A0A286XER8
Position
Unknown
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgagaggagcataagaagaagcacccagatgcttccgttaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagacatggcaaaggcggacaaggctcgttatgaaagagaaatgaaaacttatattcct
cctaagggagaaacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gccttcttcttgttctgttctgagtatcgtccaaaaatcaaaggagaacatcctggcctt
tccattggtgatgtcgcaaagaaactgggagaaatgtggaataacactgcagcagatgac
aagcagccttatgagaagaaggctgctaagctgaaggagaagtacgaaaaggacatcgct
gcctaccgagctaaaggaaagcctgatgcagcgaaaaagggagttgtcaaggctgaaaaa
agcaagaaaaagaaggaagaggaggaagatgaggaagacgaagaagatgaggaggaggag
gaagatgaagaggatgaagatgaagaagaagatgatgatgatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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