KEGG   Cloacibacillus porcorum: BED41_03980
Entry
BED41_03980       CDS       T04453                                 
Name
(GenBank) recombinase RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
cpor  Cloacibacillus porcorum
Pathway
cpor03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cpor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BED41_03980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpor03400]
    BED41_03980
Enzymes [BR:cpor01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     BED41_03980
DNA repair and recombination proteins [BR:cpor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BED41_03980
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 Helicase_RecD PIF1 AAA_22 DEAD UvrD-helicase AAA_28 nSTAND3 SLFN-g3_helicase AAA_16 PhoH HHH_2 NTPase_1 T2SSE ATPase_2 TrwB_AAD_bind AAA cobW MeaB AAA_24 AAA_18 AAA_29 Mg_chelatase ABC_tran UvrD_C NB-ARC NACHT AAA_7 Zeta_toxin AAA_23 KOW
Other DBs
NCBI-ProteinID: ANZ44321
UniProt: A0A1B2I2W3
Position
881580..883940
AA seq 786 aa
MAEKEDNVIISPVLMIELKGQVERITYHNAENGYTVLRLSVRDHADLITAVGIMAEPAQG
EMLTLEGRWEENAKYGMQFHIYKCESTLPATVTGIEKFLGSGLIRGIGPAMAKKIVDKFG
EDTIPILDDEPARLAEIKGISENKAETIAESWREQREIREVMVFLQSYGIGTGYAMRIFR
QYGAGTVAVLKDNPYRMAIDIPGIGFTIADRIAQRLGISSDSPMRVRAGVQHVLNQLIAE
GHVYAPAEILAAHSAQTLQVKLEMAREGIEQARLAEEIIVERFDDMEGKEQEAVYLPAFH
YAEVSSARNLRLLINEPYNSQCVDCDKMLPWLEREMGITLAQAQREAIITAVNSKVMVIT
GGPGTGKTTIIRAVLRMREEGGFRVMLAAPTGRAAKRMTEATGHEAKTIHRLLEYVGSPG
TGGSFMRNETNALECDLLIVDEASMIDQILFHHLLKAVPRGASLIFVGDVNQLPSVSPGN
VLKDMIDSGVCPVVMLREIFRQGRESRIIVNAHRVNDGLMPILPEDQSLELSDFYFIEPR
IDKENISEEEYKKIFENKVLQTIKKLVAENIPNRFNFDPVSDIQVLAPMHNGNVGTKRLN
MELQKILNGDGGASVQRLERVFKEGDKVMQIKNNYDKDVYNGDIGTITKVDGEESRVTVK
MDTGPVNYEFAELEELVHAYAVSIHKSQGSEYPAVIIPLLTQHYVMLQRNLLYTAITRGK
KLVVIVGAKKALRIAVENDRTRTRYTRLAQRLSGPELPFEMPSGLSPDEDELERMFEEQM
KGETKE
NT seq 2361 nt   +upstreamnt  +downstreamnt
ttggctgaaaaagaagataatgtaataatctcgcccgtcctcatgatcgagctcaaggga
caggtcgagcggataacctaccataacgcggagaacggctataccgttctccgcctcagc
gtgcgcgaccatgccgacctcatcaccgccgtcggcatcatggcggagcccgcgcagggc
gagatgctgactctcgaggggcgctgggaggaaaacgccaagtacggcatgcagtttcac
atctataagtgcgaatccaccctgcccgcgacggtgacggggatcgaaaaattcctcggc
tccggcctcatacgcggcatcggccccgcgatggcgaagaagatcgtcgacaagttcggt
gaagatacgatccccatccttgacgacgaaccggcgcgtctcgcggagataaagggtatc
agcgagaacaaggccgagaccatcgcggaatcctggcgcgagcagcgcgagatacgcgag
gtgatggtctttctccagagctacggcatcggcaccggttacgcgatgcgcatcttccgc
cagtacggcgcgggcaccgtcgcggtgcttaaagacaatccctaccggatggcgatcgac
atccccggcatcggcttcacgatcgccgaccggatcgcgcagaggctcggtatctccagc
gactcgccgatgcgggtccgcgccggcgtccagcatgtgctgaaccagctgatcgccgag
ggacacgtctatgcccccgccgaaatactcgccgcccattcggcgcagaccctgcaggtc
aagcttgaaatggcgcgcgaggggatcgaacaggcgcggctcgccgaggagatcatcgtc
gagaggtttgacgacatggagggcaaagagcaggaggcggtctacctgcccgccttccat
tacgcagaggtgagctccgcgaggaacctgcggctgctgataaacgaaccctacaacagc
cagtgcgtcgactgcgataagatgctgccctggctggagcgcgagatgggcattacgctc
gcccaggcgcagcgcgaggcgatcatcacagccgtcaattccaaggtgatggtgataacg
ggcggccccggtacgggaaagacgacgatcatccgcgccgtgctccgtatgcgcgaagag
ggcggcttccgcgtcatgctcgccgcgccgacgggacgcgccgcgaagcgcatgaccgag
gcgacgggacacgaggcgaagacgatacaccgcctgctcgaatatgtcggcagcccggga
acgggcggctccttcatgcgcaacgagacgaacgccctcgagtgcgaccttctcatcgtc
gacgaggcctcgatgatcgaccagatactattccaccacctgctcaaggcggtgccgcgc
ggcgcatcgcttatctttgtcggcgacgtcaatcagcttccttcggtctcgccgggcaac
gtcctcaaagacatgatagactcaggcgtctgccctgtggtgatgctgcgggagatattc
cgccaggggcgcgaaagccgcatcatcgtcaacgcacaccgcgtcaacgacggcctgatg
ccgatcctgccggaggaccagagcctcgaactttcggacttttatttcatcgagccgcga
attgataaggaaaatatcagcgaagaggaatacaaaaaaatcttcgagaacaaggtgctc
cagacgataaaaaagctggtcgccgaaaacattccgaaccgcttcaactttgatcccgtg
agcgacatccaggtgctcgcgccgatgcacaacggcaacgtcggcaccaaacggctcaat
atggagctgcagaagatactcaacggcgacggcggagcctccgtgcagcgtcttgagcgg
gtcttcaaagagggcgacaaggtgatgcagataaagaacaactacgacaaggacgtctat
aacggcgacatcggcacgataacgaaggtcgacggcgaggagtcgcgcgtcactgtgaag
atggacaccggccccgtaaactatgagtttgccgaactggaggagctcgtccacgcctac
gcggtctcgattcacaaatcgcaaggctccgaatatcccgccgtcatcatcccgctgctg
acgcagcactacgtaatgctgcagagaaacctgctctatacggcgataacgcgtggcaaa
aagctcgtcgtcatcgtcggcgcgaaaaaggccctccgcatcgctgtggaaaacgaccgc
acgcgcacaagatacacccggctcgcgcagcggctcagcggccccgagctgccgtttgag
atgccgtccggcctctcgcccgacgaagatgagctggaacgcatgttcgaggagcagatg
aagggagagactaaggaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (38)   
   Pfam (38)   
All databases (85)   

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