KEGG   Coniophora puteana: CONPUDRAFT_131506
Entry
CONPUDRAFT_131506 CDS       T03134                                 
Name
(RefSeq) LSM-domain-containing protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
cput  Coniophora puteana
Pathway
cput03018  RNA degradation
cput03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cput00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CONPUDRAFT_131506
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CONPUDRAFT_131506
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cput03019]
    CONPUDRAFT_131506
   03041 Spliceosome [BR:cput03041]
    CONPUDRAFT_131506
Messenger RNA biogenesis [BR:cput03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CONPUDRAFT_131506
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CONPUDRAFT_131506
Spliceosome [BR:cput03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CONPUDRAFT_131506
SSDB
Motif
Pfam: LSM SM-ATX SRA1
Other DBs
NCBI-GeneID: 19200347
NCBI-ProteinID: XP_007773978
JGI: Conpu1_131506
UniProt: A0A5M3MAJ0
Position
Unknown
AA seq 98 aa
MDEDSPPPPPPNEASPPPPPVAVSGSPTDFLKGVVGKRVIVRLTSGVDYRGILSCLDGYM
NIALEQTEEHVNGSVTNRYGDAFIRGNNVLYISAAEPL
NT seq 297 nt   +upstreamnt  +downstreamnt
atggacgaagactcgccacccccacctccccccaacgaagcatcgccgcctcccccgcct
gttgcggtatctggatctcccaccgactttctcaagggcgtcgtcgggaaacgcgtgatc
gtgcggctgacctctggcgtagattaccgcggcatactatcatgtctcgacgggtacatg
aacatcgcgctcgagcagacggaggagcacgtcaacgggtcagtcacgaaccggtacggg
gacgccttcatccggggcaacaacgtgctgtacatctctgctgccgaaccactgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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